Morten Guldborg Johnsen , Lasse Engbo Christiansen , Kaare Græsbøll
{"title":"通过使用日平均温度作为传播率季节性变化的代表,可在流行人群模型中实现温带气候下covid-19传播率的季节性变化","authors":"Morten Guldborg Johnsen , Lasse Engbo Christiansen , Kaare Græsbøll","doi":"10.1016/j.mran.2022.100235","DOIUrl":null,"url":null,"abstract":"<div><p>From march 2020 to march 2022 covid-19 has shown a consistent pattern of increasing infections during the Winter and low infection numbers during the Summer. Understanding the effects of seasonal variation on covid-19 spread is crucial for future epidemic modelling and management. In this study, seasonal variation in the transmission rate of covid-19, was estimated based on an epidemic population model of covid-19 in Denmark, which included changes in national restrictions and introduction of the <span><math><mi>α</mi></math></span>-variant covid-19 strain, in the period March 2020 - March 2021. Seasonal variation was implemented as a logistic temperature dependent scaling of the transmission rate, and parameters for the logistic relationship was estimated through rejection-based approximate bayesian computation (ABC). The likelihoods used in the ABC were based on national hospital admission data and seroprevalence data stratified into nine and two age groups, respectively. The seasonally induced reduction in the transmission rate of covid-19 in Denmark was estimated to be <span><math><mrow><mn>27</mn><mo>%</mo></mrow></math></span>, (95% CI [<span><math><mrow><mn>24</mn><mo>%</mo></mrow></math></span>; <span><math><mrow><mn>31</mn><mo>%</mo></mrow></math></span>]), when moving from peak Winter to peak Summer. The reducing effect of seasonality on transmission rate per <span><math><mrow><mo>+</mo><mn>1</mn><msup><mspace></mspace><mo>∘</mo></msup></mrow></math></span>C in daily average temperature were shown to vary based on temperature, and were estimated to be <span><math><mrow><mo>−</mo><mn>2.2</mn><mo>%</mo><mo>[</mo><mo>−</mo><mn>2.8</mn><mo>%</mo><mo>;</mo><mo>−</mo><mn>1.7</mn><mo>%</mo><mo>]</mo></mrow></math></span> pr. 1 <span><math><msup><mrow></mrow><mo>∘</mo></msup></math></span>C around <span><math><msup><mn>2</mn><mo>∘</mo></msup></math></span>C; <span><math><mrow><mn>2</mn><mo>%</mo><mo>[</mo><mo>−</mo><mn>2.3</mn><mo>%</mo><mo>;</mo><mo>−</mo><mn>1.7</mn><mo>%</mo><mo>]</mo></mrow></math></span> pr. 1 <span><math><msup><mrow></mrow><mo>∘</mo></msup></math></span>C around <span><math><mrow><mn>7</mn><msup><mspace></mspace><mo>∘</mo></msup></mrow></math></span>C; and <span><math><mrow><mn>1.7</mn><mo>%</mo><mo>[</mo><mo>−</mo><mn>2.0</mn><mo>%</mo><mo>;</mo><mo>−</mo><mn>1.5</mn><mo>%</mo><mo>]</mo></mrow></math></span> pr. 1 <span><math><msup><mrow></mrow><mo>∘</mo></msup></math></span>C around a daily average temperature of 11 <span><math><msup><mrow></mrow><mo>∘</mo></msup></math></span>C.</p></div>","PeriodicalId":48593,"journal":{"name":"Microbial Risk Analysis","volume":"22 ","pages":"Article 100235"},"PeriodicalIF":3.0000,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9546506/pdf/","citationCount":"0","resultStr":"{\"title\":\"Seasonal variation in the transmission rate of covid-19 in a temperate climate can be implemented in epidemic population models by using daily average temperature as a proxy for seasonal changes in transmission rate\",\"authors\":\"Morten Guldborg Johnsen , Lasse Engbo Christiansen , Kaare Græsbøll\",\"doi\":\"10.1016/j.mran.2022.100235\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>From march 2020 to march 2022 covid-19 has shown a consistent pattern of increasing infections during the Winter and low infection numbers during the Summer. Understanding the effects of seasonal variation on covid-19 spread is crucial for future epidemic modelling and management. In this study, seasonal variation in the transmission rate of covid-19, was estimated based on an epidemic population model of covid-19 in Denmark, which included changes in national restrictions and introduction of the <span><math><mi>α</mi></math></span>-variant covid-19 strain, in the period March 2020 - March 2021. Seasonal variation was implemented as a logistic temperature dependent scaling of the transmission rate, and parameters for the logistic relationship was estimated through rejection-based approximate bayesian computation (ABC). The likelihoods used in the ABC were based on national hospital admission data and seroprevalence data stratified into nine and two age groups, respectively. The seasonally induced reduction in the transmission rate of covid-19 in Denmark was estimated to be <span><math><mrow><mn>27</mn><mo>%</mo></mrow></math></span>, (95% CI [<span><math><mrow><mn>24</mn><mo>%</mo></mrow></math></span>; <span><math><mrow><mn>31</mn><mo>%</mo></mrow></math></span>]), when moving from peak Winter to peak Summer. The reducing effect of seasonality on transmission rate per <span><math><mrow><mo>+</mo><mn>1</mn><msup><mspace></mspace><mo>∘</mo></msup></mrow></math></span>C in daily average temperature were shown to vary based on temperature, and were estimated to be <span><math><mrow><mo>−</mo><mn>2.2</mn><mo>%</mo><mo>[</mo><mo>−</mo><mn>2.8</mn><mo>%</mo><mo>;</mo><mo>−</mo><mn>1.7</mn><mo>%</mo><mo>]</mo></mrow></math></span> pr. 1 <span><math><msup><mrow></mrow><mo>∘</mo></msup></math></span>C around <span><math><msup><mn>2</mn><mo>∘</mo></msup></math></span>C; <span><math><mrow><mn>2</mn><mo>%</mo><mo>[</mo><mo>−</mo><mn>2.3</mn><mo>%</mo><mo>;</mo><mo>−</mo><mn>1.7</mn><mo>%</mo><mo>]</mo></mrow></math></span> pr. 1 <span><math><msup><mrow></mrow><mo>∘</mo></msup></math></span>C around <span><math><mrow><mn>7</mn><msup><mspace></mspace><mo>∘</mo></msup></mrow></math></span>C; and <span><math><mrow><mn>1.7</mn><mo>%</mo><mo>[</mo><mo>−</mo><mn>2.0</mn><mo>%</mo><mo>;</mo><mo>−</mo><mn>1.5</mn><mo>%</mo><mo>]</mo></mrow></math></span> pr. 1 <span><math><msup><mrow></mrow><mo>∘</mo></msup></math></span>C around a daily average temperature of 11 <span><math><msup><mrow></mrow><mo>∘</mo></msup></math></span>C.</p></div>\",\"PeriodicalId\":48593,\"journal\":{\"name\":\"Microbial Risk Analysis\",\"volume\":\"22 \",\"pages\":\"Article 100235\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2022-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9546506/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Microbial Risk Analysis\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352352222000329\",\"RegionNum\":4,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Microbial Risk Analysis","FirstCategoryId":"93","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352352222000329","RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
Seasonal variation in the transmission rate of covid-19 in a temperate climate can be implemented in epidemic population models by using daily average temperature as a proxy for seasonal changes in transmission rate
From march 2020 to march 2022 covid-19 has shown a consistent pattern of increasing infections during the Winter and low infection numbers during the Summer. Understanding the effects of seasonal variation on covid-19 spread is crucial for future epidemic modelling and management. In this study, seasonal variation in the transmission rate of covid-19, was estimated based on an epidemic population model of covid-19 in Denmark, which included changes in national restrictions and introduction of the -variant covid-19 strain, in the period March 2020 - March 2021. Seasonal variation was implemented as a logistic temperature dependent scaling of the transmission rate, and parameters for the logistic relationship was estimated through rejection-based approximate bayesian computation (ABC). The likelihoods used in the ABC were based on national hospital admission data and seroprevalence data stratified into nine and two age groups, respectively. The seasonally induced reduction in the transmission rate of covid-19 in Denmark was estimated to be , (95% CI [; ]), when moving from peak Winter to peak Summer. The reducing effect of seasonality on transmission rate per C in daily average temperature were shown to vary based on temperature, and were estimated to be pr. 1 C around C; pr. 1 C around C; and pr. 1 C around a daily average temperature of 11 C.
期刊介绍:
The journal Microbial Risk Analysis accepts articles dealing with the study of risk analysis applied to microbial hazards. Manuscripts should at least cover any of the components of risk assessment (risk characterization, exposure assessment, etc.), risk management and/or risk communication in any microbiology field (clinical, environmental, food, veterinary, etc.). This journal also accepts article dealing with predictive microbiology, quantitative microbial ecology, mathematical modeling, risk studies applied to microbial ecology, quantitative microbiology for epidemiological studies, statistical methods applied to microbiology, and laws and regulatory policies aimed at lessening the risk of microbial hazards. Work focusing on risk studies of viruses, parasites, microbial toxins, antimicrobial resistant organisms, genetically modified organisms (GMOs), and recombinant DNA products are also acceptable.