PSTCNN:使用 PSO 引导的自调整 CNN 进行可解释的 COVID-19 诊断。

IF 0.8 4区 生物学 Q4 BIOLOGY Biocell Pub Date : 2023-01-01 Epub Date: 2022-11-18 DOI:10.32604/biocell.2021.0xxx
Wei Wang, Yanrong Pei, Shui-Hua Wang, Juan Manuel Gorrz, Yu-Dong Zhang
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引用次数: 0

摘要

自2019年以来,冠状病毒病-19(COVID-19)在全球范围内迅速蔓延,对全球经济和人类健康构成了不可忽视的威胁。它是由严重急性呼吸道综合征冠状病毒2引起的疾病,是一种Betacoronavirus属单链RNA病毒。这种病毒具有高度传染性,依靠血管紧张素转换酶 2 受体进入细胞。随着 COVID-19 确诊病例的增加,全球医疗资源匮乏导致的诊断困难日益凸显。基于深度学习的计算机辅助诊断模型具有高泛化能力,可以有效缓解这一压力。在训练此类模型时,超参数调整至关重要,会对其最终性能和训练速度产生重大影响。然而,传统的超参数调整方法通常耗时且不稳定。为了解决这个问题,我们引入了粒子群优化技术,建立了一个 PSO 引导的自调整卷积神经网络(PSTCNN),允许模型自动调整超参数。因此,建议的方法可以减少人工参与。同时,优化算法可以有针对性地选择超参数组合,从而稳定地获得更接近全局最优的解决方案。实验结果表明,PSTCNN 的灵敏度为 93.65%±1.86%,特异度为 94.32%±2.07%,精确度为 94.30%±2.04%,准确度为 93.99%±1.78%,F1 分数为 93.97%±1.78%,Matthews 相关系数为 87.99%±3.56%,Fowlkes-Mallows 指数为 93.97%±1.78%。我们的实验证明,与传统方法相比,使用优化算法对模型进行超参数调整更快、更有效。
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PSTCNN: Explainable COVID-19 diagnosis using PSO-guided self-tuning CNN.

Since 2019, the coronavirus disease-19 (COVID-19) has been spreading rapidly worldwide, posing an unignorable threat to the global economy and human health. It is a disease caused by severe acute respiratory syndrome coronavirus 2, a single-stranded RNA virus of the genus Betacoronavirus. This virus is highly infectious and relies on its angiotensin-converting enzyme 2-receptor to enter cells. With the increase in the number of confirmed COVID-19 diagnoses, the difficulty of diagnosis due to the lack of global healthcare resources becomes increasingly apparent. Deep learning-based computer-aided diagnosis models with high generalisability can effectively alleviate this pressure. Hyperparameter tuning is essential in training such models and significantly impacts their final performance and training speed. However, traditional hyperparameter tuning methods are usually time-consuming and unstable. To solve this issue, we introduce Particle Swarm Optimisation to build a PSO-guided Self-Tuning Convolution Neural Network (PSTCNN), allowing the model to tune hyperparameters automatically. Therefore, the proposed approach can reduce human involvement. Also, the optimisation algorithm can select the combination of hyperparameters in a targeted manner, thus stably achieving a solution closer to the global optimum. Experimentally, the PSTCNN can obtain quite excellent results, with a sensitivity of 93.65%±1.86%, a specificity of 94.32%±2.07%, a precision of 94.30%±2.04%, an accuracy of 93.99%±1.78%, an F1-score of 93.97%±1.78%, Matthews Correlation Coefficient of 87.99%±3.56%, and Fowlkes-Mallows Index of 93.97%±1.78%. Our experiments demonstrate that compared to traditional methods, hyperparameter tuning of the model using an optimisation algorithm is faster and more effective.

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来源期刊
Biocell
Biocell 生物-生物学
CiteScore
1.50
自引率
16.70%
发文量
259
审稿时长
>12 weeks
期刊介绍: BIOCELL welcomes Research articles and Review papers on structure, function and macromolecular organization of cells and cell components, focusing on cellular dynamics, motility and differentiation, particularly if related to cellular biochemistry, molecular biology, immunology, neurobiology, and on the suborganismal and organismal aspects of Vertebrate Reproduction and Development, Invertebrate Biology and Plant Biology.
期刊最新文献
Reversal of maternal obesity attenuates hypoxia and improves placental development in the preeclamptic-like BPH/5 mouse model. Anti-proliferative effect of Annona extracts on breast cancer cells. Effect of non-enzymatic glycation on collagen nanoscale mechanisms in diabetic and age-related bone fragility. PSTCNN: Explainable COVID-19 diagnosis using PSO-guided self-tuning CNN. Protein-mediated interactions in the dynamic regulation of acute inflammation.
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