Mukul Sonker, Diandra Doppler, Ana Egatz-Gomez, Sahba Zaare, Mohammad T Rabbani, Abhik Manna, Jorvani Cruz Villarreal, Garrett Nelson, Gihan K Ketawala, Konstantinos Karpos, Roberto C Alvarez, Reza Nazari, Darren Thifault, Rebecca Jernigan, Dominik Oberthür, Huijong Han, Raymond Sierra, Mark S Hunter, Alexander Batyuk, Christopher J Kupitz, Robert E Sublett, Frederic Poitevin, Stella Lisova, Valerio Mariani, Alexandra Tolstikova, Sebastien Boutet, Marc Messerschmidt, J Domingo Meza-Aguilar, Raimund Fromme, Jose M Martin-Garcia, Sabine Botha, Petra Fromme, Thomas D Grant, Richard A Kirian, Alexandra Ros
{"title":"电刺激液滴喷射器,用于减少序列晶体学中的样品消耗。","authors":"Mukul Sonker, Diandra Doppler, Ana Egatz-Gomez, Sahba Zaare, Mohammad T Rabbani, Abhik Manna, Jorvani Cruz Villarreal, Garrett Nelson, Gihan K Ketawala, Konstantinos Karpos, Roberto C Alvarez, Reza Nazari, Darren Thifault, Rebecca Jernigan, Dominik Oberthür, Huijong Han, Raymond Sierra, Mark S Hunter, Alexander Batyuk, Christopher J Kupitz, Robert E Sublett, Frederic Poitevin, Stella Lisova, Valerio Mariani, Alexandra Tolstikova, Sebastien Boutet, Marc Messerschmidt, J Domingo Meza-Aguilar, Raimund Fromme, Jose M Martin-Garcia, Sabine Botha, Petra Fromme, Thomas D Grant, Richard A Kirian, Alexandra Ros","doi":"10.1016/j.bpr.2022.100081","DOIUrl":null,"url":null,"abstract":"<p><p>With advances in X-ray free-electron lasers (XFELs), serial femtosecond crystallography (SFX) has enabled the static and dynamic structure determination for challenging proteins such as membrane protein complexes. In SFX with XFELs, the crystals are typically destroyed after interacting with a single XFEL pulse. Therefore, thousands of new crystals must be sequentially introduced into the X-ray beam to collect full data sets. Because of the serial nature of any SFX experiment, up to 99% of the sample delivered to the X-ray beam during its \"off-time\" between X-ray pulses is wasted due to the intrinsic pulsed nature of all current XFELs. To solve this major problem of large and often limiting sample consumption, we report on improvements of a revolutionary sample-saving method that is compatible with all current XFELs. We previously reported 3D-printed injection devices coupled with gas dynamic virtual nozzles (GDVNs) capable of generating samples containing droplets segmented by an immiscible oil phase for jetting crystal-laden droplets into the path of an XFEL. Here, we have further improved the device design by including metal electrodes inducing electrowetting effects for improved control over droplet generation frequency to stimulate the droplet release to matching the XFEL repetition rate by employing an electrical feedback mechanism. We report the improvements in this electrically triggered segmented flow approach for sample conservation in comparison with a continuous GDVN injection using the microcrystals of lysozyme and 3-deoxy-D-manno-octulosonate 8-phosphate synthase and report the segmented flow approach for sample injection applied at the Macromolecular Femtosecond Crystallography instrument at the Linear Coherent Light Source for the first time.</p>","PeriodicalId":72402,"journal":{"name":"Biophysical reports","volume":null,"pages":null},"PeriodicalIF":2.4000,"publicationDate":"2022-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/48/eb/main.PMC9680787.pdf","citationCount":"0","resultStr":"{\"title\":\"Electrically stimulated droplet injector for reduced sample consumption in serial crystallography.\",\"authors\":\"Mukul Sonker, Diandra Doppler, Ana Egatz-Gomez, Sahba Zaare, Mohammad T Rabbani, Abhik Manna, Jorvani Cruz Villarreal, Garrett Nelson, Gihan K Ketawala, Konstantinos Karpos, Roberto C Alvarez, Reza Nazari, Darren Thifault, Rebecca Jernigan, Dominik Oberthür, Huijong Han, Raymond Sierra, Mark S Hunter, Alexander Batyuk, Christopher J Kupitz, Robert E Sublett, Frederic Poitevin, Stella Lisova, Valerio Mariani, Alexandra Tolstikova, Sebastien Boutet, Marc Messerschmidt, J Domingo Meza-Aguilar, Raimund Fromme, Jose M Martin-Garcia, Sabine Botha, Petra Fromme, Thomas D Grant, Richard A Kirian, Alexandra Ros\",\"doi\":\"10.1016/j.bpr.2022.100081\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>With advances in X-ray free-electron lasers (XFELs), serial femtosecond crystallography (SFX) has enabled the static and dynamic structure determination for challenging proteins such as membrane protein complexes. 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Here, we have further improved the device design by including metal electrodes inducing electrowetting effects for improved control over droplet generation frequency to stimulate the droplet release to matching the XFEL repetition rate by employing an electrical feedback mechanism. We report the improvements in this electrically triggered segmented flow approach for sample conservation in comparison with a continuous GDVN injection using the microcrystals of lysozyme and 3-deoxy-D-manno-octulosonate 8-phosphate synthase and report the segmented flow approach for sample injection applied at the Macromolecular Femtosecond Crystallography instrument at the Linear Coherent Light Source for the first time.</p>\",\"PeriodicalId\":72402,\"journal\":{\"name\":\"Biophysical reports\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.4000,\"publicationDate\":\"2022-09-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/48/eb/main.PMC9680787.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biophysical reports\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1016/j.bpr.2022.100081\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2022/12/14 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"BIOPHYSICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biophysical reports","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1016/j.bpr.2022.100081","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/12/14 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"BIOPHYSICS","Score":null,"Total":0}
引用次数: 0
摘要
随着 X 射线自由电子激光器(XFEL)的发展,串行飞秒晶体学(SFX)已能对膜蛋白复合物等具有挑战性的蛋白质进行静态和动态结构测定。在使用 XFEL 进行 SFX 时,晶体在与单个 XFEL 脉冲相互作用后通常会被破坏。因此,必须依次将数千个新晶体引入 X 射线束,才能收集到完整的数据集。由于任何 SFX 实验都具有串行性质,在 X 射线脉冲之间的 "关闭时间 "内,由于当前所有 XFEL 固有的脉冲性质,多达 99% 的样品被浪费到 X 射线束中。为了解决样品消耗量大且经常受到限制的这一主要问题,我们报告了一种革命性的样品节省方法的改进情况,该方法与目前所有的 XFEL 兼容。我们以前曾报道过三维打印喷射装置与气体动态虚拟喷嘴(GDVN)的结合,该装置能够生成包含由不相溶油相分割的液滴的样品,用于将含有晶体的液滴喷射到 XFEL 的路径上。在这里,我们进一步改进了设备的设计,加入了诱导电润湿效应的金属电极,以改进对液滴生成频率的控制,从而通过采用电反馈机制来刺激液滴释放,使其与 XFEL 的重复率相匹配。我们利用溶菌酶和 3-deoxy-D-manno-octulosonate 8-phosphate 合酶的微晶,报告了这种电触发分段流动方法与连续 GDVN 注入相比在样品保存方面的改进,并首次报告了在线性相干光源的大分子飞秒晶体学仪器上应用的分段流动样品注入方法。
Electrically stimulated droplet injector for reduced sample consumption in serial crystallography.
With advances in X-ray free-electron lasers (XFELs), serial femtosecond crystallography (SFX) has enabled the static and dynamic structure determination for challenging proteins such as membrane protein complexes. In SFX with XFELs, the crystals are typically destroyed after interacting with a single XFEL pulse. Therefore, thousands of new crystals must be sequentially introduced into the X-ray beam to collect full data sets. Because of the serial nature of any SFX experiment, up to 99% of the sample delivered to the X-ray beam during its "off-time" between X-ray pulses is wasted due to the intrinsic pulsed nature of all current XFELs. To solve this major problem of large and often limiting sample consumption, we report on improvements of a revolutionary sample-saving method that is compatible with all current XFELs. We previously reported 3D-printed injection devices coupled with gas dynamic virtual nozzles (GDVNs) capable of generating samples containing droplets segmented by an immiscible oil phase for jetting crystal-laden droplets into the path of an XFEL. Here, we have further improved the device design by including metal electrodes inducing electrowetting effects for improved control over droplet generation frequency to stimulate the droplet release to matching the XFEL repetition rate by employing an electrical feedback mechanism. We report the improvements in this electrically triggered segmented flow approach for sample conservation in comparison with a continuous GDVN injection using the microcrystals of lysozyme and 3-deoxy-D-manno-octulosonate 8-phosphate synthase and report the segmented flow approach for sample injection applied at the Macromolecular Femtosecond Crystallography instrument at the Linear Coherent Light Source for the first time.