冠状病毒科推测的金属结合蛋白组。

IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Metallomics Pub Date : 2023-01-10 DOI:10.1093/mtomcs/mfad001
Himisha Dixit, Vipin Upadhyay, Mahesh Kulharia, Shailender Kumar Verma
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引用次数: 2

摘要

金属蛋白因在包括病毒在内的所有生命形式中扮演各种物理化学过程而闻名。一些危及生命的病毒(如冠状病毒科的一些成员)经常出现和重新出现,并在全球迅速传播。本研究旨在鉴定和表征冠状病毒科病毒的金属结合蛋白(MBPs),并进一步了解MBP在宿主细胞内和外部环境中维持和繁殖病毒的作用。在这项研究中,利用了冠状病毒科的可用蛋白质组。对鉴定出的潜在MBPs进行了功能域、结构方面和亚细胞定位分析。我们还展示了其他冠状病毒科成员中所有预测MBPs的系统发育方面,以了解其各自宿主之间的进化趋势。来自51种不同冠状病毒的256种蛋白质被预测为MBPs。这些MBPs在宿主细胞内病毒的复制和存活中发挥着各种关键作用。半胱氨酸、天冬氨酸、苏氨酸和谷氨酰胺是与各自金属离子相互作用的关键氨基酸残基。我们的观察结果还表明,该病毒家族的金属蛋白在不同宿主中循环和进化,这支持了冠状病毒的人畜共患性。对冠状病毒科MBPs的全面了解可能有助于设计新的治疗性金属蛋白靶点。此外,对病毒MBPs的研究也有助于了解MBPs在病毒发病机制和病毒-宿主相互作用中的作用。
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The putative metal-binding proteome of the Coronaviridae family.

Metalloproteins are well-known for playing various physicochemical processes in all life forms, including viruses. Some life-threatening viruses (such as some members of the Coronaviridae family of viruses) are emerged and remerged frequently and are rapidly transmitted throughout the globe. This study aims to identify and characterize the metal-binding proteins (MBPs) of the Coronaviridae family of viruses and further provides insight into the MBP's role in sustaining and propagating viruses inside a host cell and in the outer environment. In this study, the available proteome of the Coronaviridae family was exploited. Identified potential MBPs were analyzed for their functional domains, structural aspects, and subcellular localization. We also demonstrate phylogenetic aspects of all predicted MBPs among other Coronaviridae family members to understand the evolutionary trend among their respective hosts. A total of 256 proteins from 51 different species of coronaviruses are predicted as MBPs. These MBPs perform various key roles in the replication and survival of viruses within the host cell. Cysteine, aspartic acid, threonine, and glutamine are key amino acid residues interacting with respective metal ions. Our observations also indicate that the metalloproteins of this family of viruses circulated and evolved in different hosts, which supports the zoonotic nature of coronaviruses. The comprehensive information on MBPs of the Coronaviridae family may be further helpful in designing novel therapeutic metalloprotein targets. Moreover, the study of viral MBPs can also help to understand the roles of MBPs in virus pathogenesis and virus-host interactions.

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来源期刊
Metallomics
Metallomics 生物-生化与分子生物学
CiteScore
7.00
自引率
5.90%
发文量
87
审稿时长
1 months
期刊介绍: Global approaches to metals in the biosciences
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