我们之间的空间:模拟合成微生物群落动力学中的空间异质性。

IF 2.4 Q3 BIOPHYSICS Biophysical reports Pub Date : 2022-12-14 DOI:10.1016/j.bpr.2022.100085
Ryan Godin, Bhargav R Karamched, Shawn D Ryan
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引用次数: 1

摘要

生物工程的核心工作是构建具有所需特性的多菌株微生物群落。通常,基因网络在菌株之间被划分,菌株通过群体感应进行交流,从而允许复杂的行为。然而,多菌株微生物群落中涌现的时空模式如何影响群落动力学的基本问题尚未得到很好的理解。在这里,我们提出了一个计算上易于处理和直接的建模框架,明确地允许将时空模式与群体动力学联系起来。我们根据先前发表的结果验证了我们的模型,并预测了空间异质性如何影响应变间通信。通过研究空间模式对微生物动力学的影响,我们的建模框架为实验人员提供了信息,有助于促进对复杂微生物系统的理解,并支持涉及它们的应用程序的开发。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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The space between us: Modeling spatial heterogeneity in synthetic microbial consortia dynamics.

A central endeavor in bioengineering concerns the construction of multistrain microbial consortia with desired properties. Typically, a gene network is partitioned between strains, and strains communicate via quorum sensing, allowing for complex behaviors. Yet a fundamental question of how emergent spatiotemporal patterning in multistrain microbial consortia affects consortial dynamics is not understood well. Here, we propose a computationally tractable and straightforward modeling framework that explicitly allows linking spatiotemporal patterning to consortial dynamics. We validate our model against previously published results and make predictions of how spatial heterogeneity impacts interstrain communication. By enabling the investigation of spatial patterns effects on microbial dynamics, our modeling framework informs experimentalists, helps advance the understanding of complex microbial systems, and supports the development of applications involving them.

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来源期刊
Biophysical reports
Biophysical reports Biophysics
CiteScore
2.40
自引率
0.00%
发文量
0
审稿时长
75 days
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