{"title":"U.Taxonstand:一个用于规范动植物科学名称的R包","authors":"Jian Zhang , Hong Qian","doi":"10.1016/j.pld.2022.09.001","DOIUrl":null,"url":null,"abstract":"<div><p>The scientific names of organisms are key identifiers of plants and animals. Correctly treating scientific names is a prerequisite for biodiversity research and documentation. Here, we present an R package, ‘U.Taxonstand’, which can standardize and harmonize scientific names in plant and animal species lists at a fast speed and at a high rate of matching success. Unlike most of other similar R packages each of which works with only one taxonomic database, U.Taxonstand can work with all taxonomic databases, as long as they are properly formatted. Multiple databases for plants and animals that can be directly used by U.Taxonstand, which include bryophytes, vascular plants, amphibians, birds, fishes, mammals, and reptiles, are available online. U.Taxonstand can be a very useful tool for botanists, zoologists, ecologists and biogeographers to standardize and harmonize scientific names of organisms.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 1","pages":"Pages 1-5"},"PeriodicalIF":4.6000,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/81/43/main.PMC9975469.pdf","citationCount":"21","resultStr":"{\"title\":\"U.Taxonstand: An R package for standardizing scientific names of plants and animals\",\"authors\":\"Jian Zhang , Hong Qian\",\"doi\":\"10.1016/j.pld.2022.09.001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The scientific names of organisms are key identifiers of plants and animals. Correctly treating scientific names is a prerequisite for biodiversity research and documentation. Here, we present an R package, ‘U.Taxonstand’, which can standardize and harmonize scientific names in plant and animal species lists at a fast speed and at a high rate of matching success. Unlike most of other similar R packages each of which works with only one taxonomic database, U.Taxonstand can work with all taxonomic databases, as long as they are properly formatted. Multiple databases for plants and animals that can be directly used by U.Taxonstand, which include bryophytes, vascular plants, amphibians, birds, fishes, mammals, and reptiles, are available online. U.Taxonstand can be a very useful tool for botanists, zoologists, ecologists and biogeographers to standardize and harmonize scientific names of organisms.</p></div>\",\"PeriodicalId\":20224,\"journal\":{\"name\":\"Plant Diversity\",\"volume\":\"45 1\",\"pages\":\"Pages 1-5\"},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2023-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/81/43/main.PMC9975469.pdf\",\"citationCount\":\"21\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Plant Diversity\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2468265922000944\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Diversity","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2468265922000944","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
U.Taxonstand: An R package for standardizing scientific names of plants and animals
The scientific names of organisms are key identifiers of plants and animals. Correctly treating scientific names is a prerequisite for biodiversity research and documentation. Here, we present an R package, ‘U.Taxonstand’, which can standardize and harmonize scientific names in plant and animal species lists at a fast speed and at a high rate of matching success. Unlike most of other similar R packages each of which works with only one taxonomic database, U.Taxonstand can work with all taxonomic databases, as long as they are properly formatted. Multiple databases for plants and animals that can be directly used by U.Taxonstand, which include bryophytes, vascular plants, amphibians, birds, fishes, mammals, and reptiles, are available online. U.Taxonstand can be a very useful tool for botanists, zoologists, ecologists and biogeographers to standardize and harmonize scientific names of organisms.
Plant DiversityAgricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
8.30
自引率
6.20%
发文量
1863
审稿时长
35 days
期刊介绍:
Plant Diversity (formerly Plant Diversity and Resources) is an international plant science journal that publishes substantial original research and review papers that
advance our understanding of the past and current distribution of plants,
contribute to the development of more phylogenetically accurate taxonomic classifications,
present new findings on or insights into evolutionary processes and mechanisms that are of interest to the community of plant systematic and evolutionary biologists.
While the focus of the journal is on biodiversity, ecology and evolution of East Asian flora, it is not limited to these topics. Applied evolutionary issues, such as climate change and conservation biology, are welcome, especially if they address conceptual problems. Theoretical papers are equally welcome. Preference is given to concise, clearly written papers focusing on precisely framed questions or hypotheses. Papers that are purely descriptive have a low chance of acceptance.
Fields covered by the journal include:
plant systematics and taxonomy-
evolutionary developmental biology-
reproductive biology-
phylo- and biogeography-
evolutionary ecology-
population biology-
conservation biology-
palaeobotany-
molecular evolution-
comparative and evolutionary genomics-
physiology-
biochemistry