一个运行时系统的有限元方法在一个分区的全局地址空间

Stefan Groth, D. Grünewald, J. Teich, Frank Hannig
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引用次数: 2

摘要

随着性能接近百亿亿级,高性能计算(HPC)领域的应用程序必须扩展到不断增加的计算节点数量。全局地址空间编程接口(GASPI)通信API承诺通过在分区的全局地址空间(PGAS)中提供高度灵活和高效的编程模型来处理这一挑战。基于网格的偏微分方程(PDEs)求解由于其高计算强度而适合应用于超级计算机。这种求解器的实现是高度跨学科的,因此需要从开发数值算法中抽象出特定于硬件的并行化技术。我们提出了一个开源的运行时系统(RTS),它分布和并行设备无关的内核,它定义了非结构化网格上的算法。我们描述了RTS如何抽象迭代求解器的公共部分,并进一步解释了如何并行化和分发这些组件。我们进一步展示了我们的方法在几个微基准测试和不连续伽辽金方法(DGM)的实现中的效率。结果表明,我们几乎可以完全隐藏所有同步开销,并且RTS只施加很小的计算成本。
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A runtime system for finite element methods in a partitioned global address space
With approaching exascale performance, applications in the domain of high-performance computing (HPC) have to scale to an ever-increasing amount of compute nodes. The Global Address Space Programming Interface (GASPI) communication API promises to handle this challenge by providing a highly flexible and efficient programming model in a partitioned global address space (PGAS). Suitable applications targeting supercomputers include the domain of mesh-based solvers for partial differential equations (PDEs) due to their high computational intensity. The implementation of such solvers is highly interdisciplinary, which therefore requires an abstraction of hardware-specific parallelization techniques from developing numerical algorithms. We present an open-source run-time system (RTS) that distributes and parallelizes device-agnostic kernels, which define algorithms on unstructured grids. We describe how the RTS abstracts common parts of iterative solvers and further explain how to parallelize and distribute these components. We further show the efficiency of our approach for several microbenchmarks and an implementation of the discontinuous Galerkin method (DGM). The results show that we can almost completely hide all synchronization overhead and that the RTS only imposes a small computational cost.
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