动态参数不确定的模糊随机Petri网肿瘤免疫系统建模

Sajad Shafiekhani, S. Rahbar, Fahimeh Akbarian, A. Jafari
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引用次数: 6

摘要

不确定性作为肿瘤免疫系统的固有特征,导致这个复杂网络的行为不可预测。肿瘤免疫系统的不确定性是由于细胞-细胞相互作用的随机性,模糊,不完整的数据,肿瘤的动态特性(包括,例如,细胞外配体,突变类型,血管状态,表型分布)随时间和患者依赖特性而变化。模糊随机Petri网(FSPN)将随机Petri网与模糊集相结合,可以捕捉到这种不确定性。SPN模型考虑了细胞间相互作用的随机性,模糊集考虑了模糊性。本研究的FSPN用模糊数代替清晰数来表示SPN的动力学参数。本研究的肿瘤免疫系统考虑肿瘤细胞、细胞毒性T淋巴细胞(CTL)和髓源性抑制细胞的相互作用作为系统的主要组成部分。ctl是由细胞毒性T细胞的免疫激活产生的,MDSCs在癌症等病理情况下增加,获得强大的免疫抑制活性。利用FSPN方法获得了动力学参数不确定时肿瘤免疫系统的动力学行为,并计算了动力学参数不确定时肿瘤免疫系统的稳态行为。该模型模拟了细胞在肿瘤逃逸和肿瘤消除阶段的动力学过程。FSPN证明,随着模型参数不确定性的增加,单元动力学的不确定性也随之增加。结果表明,如果模型动力学参数是一个具有三角形隶属函数的模糊数,则单元的不确定性区间相对于α -切割是三角形的。该方法可用于任何具有不确定信息的生物网络的建模和仿真。
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Fuzzy Stochastic Petri Net with Uncertain Kinetic Parameters for Modeling Tumor-Immune System
Uncertainty as inherent feature of Tumor-Immune system causes unpredictable behaviors of this complex network. Uncertainty of tumor-immune system is due to randomness in cell-cell interactions, vague, incomplete data, dynamic properties of tumor (including, e.g., extracellular ligands, mutation types, vascular status, phenotypic distribution) which are varying during time and patient-dependent properties. Fuzzy Stochastic Petri Net (FSPN) can capture this uncertainty that combine Stochastic Petri Net (SPN) with fuzzy sets. SPN model the dynamics of this complex network with regarding randomness in cell interactions and fuzzy sets consider fuzziness. FSPN of this study associate a fuzzy number instead of crisp number to kinetic parameter of SPN. Tumor-immune system of this study consider interactions of Tumor cells, Cytotoxic T lymphocytes (CTL) and Myeloid-derived suppressor cell as major component of system. CTLs are produced by immune activation of cytotoxic T cells and MDSCs augment in pathological situations such as cancer that acquire strong immunosuppressive activities. The dynamical behavior of tumor-immune system with regarding uncertain kinetic parameters is achieved by FSPN and the steady state behavior of the system with regarding fuzzy uncertain kinetic parameters is computed. The model simulates the dynamics of the cells in tumor escape and tumor elimination phases. FSPN proves that with increasing uncertainty of model parameters, the uncertainty of cell dynamics also increases. We showed that if the model kinetic parameters be a fuzzy number with a triangular membership function, the uncertainty interval of the cells is triangular in relation to the alpha-cuts.This method can be used for modeling and simulation of any biological network with uncertain information.
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