{"title":"用于分析分枝杆菌生长的BACTEC MGIT 960数据的MATLAB/OCTAVE工具箱","authors":"E. Postnikov, M. Dogonadze, A. Lavrova","doi":"10.1109/ICIIBMS50712.2020.9336199","DOIUrl":null,"url":null,"abstract":"We present a toolbox for automatized processing files, which contain output data on mycobacterial growth from BACTEC MGIT 960 system, and mathematical models addressed to peculiarities in the growth dynamics revealed from high-resolution records. The data processing includes reading a standardised spreadsheet, its formatting into datasets with respect to the hours of recording and BACTEC intensity units prepared for the subsequent analysis. The case studies reveal the combination of a general trend satisfying the Gompertz growth curve and a series of repeating growth shapes hypothesised as an exhibition of bacterial synchronization phenomena.","PeriodicalId":243033,"journal":{"name":"2020 5th International Conference on Intelligent Informatics and Biomedical Sciences (ICIIBMS)","volume":"326 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2020-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"A MATLAB/OCTAVE toolbox for analysis of BACTEC MGIT 960 data for mycobacterial growth\",\"authors\":\"E. Postnikov, M. Dogonadze, A. Lavrova\",\"doi\":\"10.1109/ICIIBMS50712.2020.9336199\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We present a toolbox for automatized processing files, which contain output data on mycobacterial growth from BACTEC MGIT 960 system, and mathematical models addressed to peculiarities in the growth dynamics revealed from high-resolution records. The data processing includes reading a standardised spreadsheet, its formatting into datasets with respect to the hours of recording and BACTEC intensity units prepared for the subsequent analysis. The case studies reveal the combination of a general trend satisfying the Gompertz growth curve and a series of repeating growth shapes hypothesised as an exhibition of bacterial synchronization phenomena.\",\"PeriodicalId\":243033,\"journal\":{\"name\":\"2020 5th International Conference on Intelligent Informatics and Biomedical Sciences (ICIIBMS)\",\"volume\":\"326 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-11-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2020 5th International Conference on Intelligent Informatics and Biomedical Sciences (ICIIBMS)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ICIIBMS50712.2020.9336199\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2020 5th International Conference on Intelligent Informatics and Biomedical Sciences (ICIIBMS)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ICIIBMS50712.2020.9336199","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
A MATLAB/OCTAVE toolbox for analysis of BACTEC MGIT 960 data for mycobacterial growth
We present a toolbox for automatized processing files, which contain output data on mycobacterial growth from BACTEC MGIT 960 system, and mathematical models addressed to peculiarities in the growth dynamics revealed from high-resolution records. The data processing includes reading a standardised spreadsheet, its formatting into datasets with respect to the hours of recording and BACTEC intensity units prepared for the subsequent analysis. The case studies reveal the combination of a general trend satisfying the Gompertz growth curve and a series of repeating growth shapes hypothesised as an exhibition of bacterial synchronization phenomena.
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