转移RNA是从核酶进化而来的吗?一项计算机研究

Bruce K. Kowiatek
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引用次数: 1

摘要

转移RNA (tRNA)被广泛认为是地球上最古老的核酸之一,如果不是最古老的话。与此同时,核糖酶,一种与现在的蛋白质酶具有许多相同功能的rna催化剂,也被认为是同样古老的。虽然有人认为tRNA是自然界中氨基酸的主要氨基酰化酶,在氨基酰-tRNA合成酶(aaRS)蛋白酶的帮助下,从一种自氨基酰化核酶进化而来,但据笔者所知,还没有进行过研究,寻找两者之间的核苷酸序列相关性;这种相关性表明,在现代tRNA中,这种核酶的部分或全部是守恒的。为此,利用几个数据库进行了一项计算机研究,以搜索古细菌中高度保守的核苷酸序列的高比例,古细菌被认为是最古老的生物,取得了非常成功的结果,并在这里讨论了它们的意义。
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Did transfer RNA evolve from a ribozyme? An in-silico study
Transfer RNA (tRNA) is widely believed to be one of the oldest, if not the oldest nucleic acid on Earth. Concurrently, ribozymes, RNA-only catalysts that perform many of the same functions as present-day protein enzymes, are also thought to be just as ancient. While the position has been posited that tRNA, nature’s chief aminoacylator of amino acids with the assistance of aminoacyl-tRNA synthetase (aaRS) protein enzymes, evolved from a self-aminoacylating ribozyme, no studies have been performed, to the best of this author’s knowledge, searching for nucleotide sequence correlation between the two; such correlation would indicate the conservation of part or all of such a ribozyme in modern-day tRNA. To that end, an in-silico study utilizing several databases was performed to search for a high percentage of highly conserved nucleotide sequences in archaea, believed to be the most ancient of organisms, with very successful results and their implications discussed here.
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