MyDNAmark.org:马来西亚物种基因组可视化数据库

Vei Siang Chan, F. Mohamed, Faezah Mohd Salleh, Andrés Iglesias, Alina Wagiran, Ali Selamat
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引用次数: 0

摘要

马来西亚是世界上生物多样性最丰富的地区之一。因此,记录这些丰富的生物多样性数据对维护和改进国家保护工作具有重要意义。然而,缺乏全国性的基因组测序阻碍了更复杂的物种鉴定、数据管理和分析活动。因此,本项目旨在设计和实现MyDNAmark.org,一个综合性的一站式在线DNA参考数据库,集成了DNA可视化和数字参考,使用户可以交互式地搜索、检索和分析收集到的DNA测序数据。本文记录了MyDNAmark.org的系统架构和实现方法。MyDNAmark.org的结果可以在网络的用户界面上显示生物多样性的分类信息,并将复杂的DNA数据集可视化,从而提供新的见解。最后,作者确定了MyDNAmark.org未来的几个改进工作,包括改进用户交互,添加可视化方法以支持更多的生物信息学任务,以及进行正式的用户评估。
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MyDNAmark.org: A Comprehensive Genomic Visualisation Database for Malaysian Species
Malaysia is one of the most megadiverse regions in the world. Therefore, it is important to record these rich biodiversity data to safeguard and improve national conservation efforts. However, the lack of nationwide genomic sequencing hampers a more sophisticated species identification, data management, and analytics activities. Thus, this project aims to design and implement MyDNAmark.org, a comprehensive one-stop online DNA reference database with integrated DNA visualisation and digital references to allow the users to search, retrieve and analyse the collected DNA sequencing data interactively. This paper documented the system architecture and implementation methods to create MyDNAmark.org. The results of MyDNAmark.org can display taxonomy information of biodiversity in the web’s user interfaces and visualise the complex set of DNA data to allow new insights. Lastly, the authors identified several future works to improve MyDNAmark.org including improve user interaction, add visualisation methods to support more bioinformatics tasks, and conduct formal user evaluation.
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