网络基序检测过程中子图枚举的并行加速

B. Mursa, A. Andreica, L. Dioşan
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引用次数: 1

摘要

网络基序是加速复杂网络动力学理解应用研究的理想候选者,引起了许多领域的极大兴趣。在寻找这些主题的过程中出现的最大问题之一是性能。从将初始网络划分为子图到子图聚类,所使用的每种算法都解决一个NP问题。因此,有许多算法试图解决网络主题发现问题,但是从时间性能的角度来看,没有完美的方法,只有比其他方法更快的解决方案。本文提出了一个重新设计的最具竞争力的算法之一的子图枚举称为ESU在文献中发现。在建议的方法中,可以使用并行编程来处理给定的网络,可以使用进程驱动模型,也可以使用混合模型(进程驱动和线程驱动)。最后,使用基准图对现有模型和提出的模型进行比较,揭示竞争结果。
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Parallel Acceleration of Subgraph Enumeration in the Process of Network Motif Detection
Network motifs bring a great interest to many fields, because they are a perfect candidate to speed up the applied research in the understanding of complex networks dynamics. One of the biggest problems raised in the process of finding these motifs is the performance. Starting from splitting the initial network into subgraphs to the subgraphs clusterization, each algorithm used addresses an NP problem. Hence there are many algorithms that are trying to solve network motifs discovery, however there is no perfect approach talking from a time performance perspective, but only solutions that are faster than others. This paper presents a redesign of one of the most competitive algorithms for subgraphs enumeration found in the literature called ESU. In the proposed approach a given network can be processed by using parallel programming, either with a process-driven model, or a hybrid one (process-driven and thread-driven). Finally, the existing and proposed models are compared using benchmark graphs, revealing competitive results.
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