基于路径的图形弹性度量:基于GPU的高阶分析

G. Drakopoulos, Xenophon Liapakis, Giannis Tzimas, Phivos Mylonas
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引用次数: 9

摘要

结构弹性是现实世界中一个固有的、最重要的属性,它是一个巨大的、无尺度的图形,比如那些在大脑网络、蛋白质到蛋白质的相互作用图、物流和供应链以及社交媒体等中经常遇到的图形。这意味着,如果删除一小部分边,甚至删除带有关联边的顶点,那么可以找到替代路径,尽管可能更长,从而使整个图的连通性保持完整。这种在自然界中不断表现出来的耐久性可以归结为三个主要原因。首先,几乎就构造而言,无标度图具有相对较高的密度。此外,它们具有短直径或至少具有有效直径。最后,在群体上递归地构建无标度图。因此,在一个群落中,一些边缘甚至顶点的删除的影响通常是孤立的,因此删除的影响被否定了。这些性质最终源于度分布。本文提出了一种新的、通用的、可扩展的图弹性度量方法,该度量方法依赖于通过具有较大通信和结构价值的某些顶点的路径数的加权和。最后,讨论了CUDA实现,并将其与串行实现进行了比较。度量性能是根据总计算时间和并行度来评估的。
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A Graph Resilience Metric Based On Paths: Higher Order Analytics With GPU
Structural resilience is an inherent, paramount property of real world, massive, scale free graphs such as those typically encountered in brain networks, protein-to-protein interaction diagrams, logistics and supply chains, as well as social media among others. This means that in case a small fraction of edges or even vertices with their incident edges are deleted, then alternative, although possibly longer, paths can be found such that the overall graph connectivity remains intact. This durability, which is constantly exhibited in nature, can be attributed to three main reasons. First, almost by construction, scale free graphs have a relatively high density. Moreover, they have a short diameter or at least an effective diameter. Finally, scale free graphs are recursively built on communities. As a consequence, the effect of a few edge or even vertex deletions inside a community remains isolated there as a rule and the effects of deletion are thus negated. Ultimately these properties stem from the degree distribution. In this conference paper is proposed a new, generic, and scalable graph resilience metric which relies on the weighted sum of the number of paths crossing certain vertices of great communication and structural value. Finally, the CUDA implementation is discussed and compared to a serial one in mex. The metric performance is assessed in terms of total computational time and parallelism.
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