基因表达数据聚类的无监督方法

T. Chandrasekhar, K. Thangavel, E. Elayaraja
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引用次数: 5

摘要

微阵列使得在不同的实验条件下同时监测数千个基因的表达谱成为可能。鉴定共表达基因及其相关模式是基因芯片或基因表达数据分析的中心目标,也是生物信息学研究的重要任务。本文将无监督基因选择方法和基于K-Means算法的CCIA应用于基因表达数据的聚类。本文提出的聚类算法克服了在指定最佳簇数和初始化良好簇质心方面的缺点。基因表达数据表明,基于剪影系数的聚类方法可以很好地识别出紧凑的聚类。
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Gene expression data clustering using unsupervised methods
Microarrays are made it possible to simultaneously monitor the expression profiles of thousands of genes under various experimental conditions. Identification of co-expressed genes and coherent patterns is the central goal in microarray or gene expression data analysis and is an important task in bioinformatics research. In this work the unsupervised Gene selection methods and CCIA with K-Means algorithms have been applied for clustering of Gene Expression Data. This proposed clustering algorithm overcomes the drawbacks in terms of specifying the optimal number of clusters and initialization of good cluster centroids. Gene Expression Data show that could identify compact clusters with performs well in terms of the Silhouette Coefficients cluster measure.
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