在超级计算机上使用性能建模加速混合DFT仿真

Yosuke Oyama, Takumi Honda, Atsushi Ishikawa, Koichi Shirahata
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摘要

密度泛函理论(DFT)是一种从原子和分子的电子密度计算电子能量的电子结构理论。在几种DFT方法中,一种称为“混合DFT”的方法在原DFT交换能量的基础上增加Hartree-Fock交换能量,提高了能量估计的精度。然而,这引入了额外的计算成本,阻碍了它在大规模计算中的广泛应用。针对这些问题,提出了一种自动调优混合DFT软件计算配置的性能模型。所提出的模型使得不需要对所有参数组合执行实际计算就可以穷尽地搜索参数以最小化计算时间成为可能。提出了几种针对Fugaku超级计算机设计的混合DFT优化技术。结果表明,结合所有方法,在Fugaku和ABCI上,52原子输入的节点时间成本分别降低了2.23倍和2.68倍。
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Accelerating Hybrid DFT Simulations Using Performance Modeling on Supercomputers
Density Functional Theory (DFT) is an electronic-structure theory that computes the electronic energy of atoms and molecules from their electron density. Among several DFT methods, one called “hybrid DFT” adds the Hartree-Fock exchange energy to the original DFT exchange energy, and it improves the accuracy of the estimation of energy. However, this introduces additional computational costs, preventing its wide application for large-scale calculations. In light of those issues, a performance model to tune the computational configurations for hybrid DFT software automatically is proposed. The proposed model makes it possible to exhaustively search for parameters to minimize computation time without having to execute actual calculations with all parameter combinations. Several techniques for optimizing hybrid DFT, specially designed for the Fugaku supercomputer, are also proposed. It is concluded that combining all approaches reduces node-time cost by 2.23x and 2.68x for a 52-atom input on Fugaku and ABCI, respectively.
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