Young-Ho Ha, Ye-Rim Choi, Ara Cho, Tae-Hee Kim, Young-Soo Kim, Sang-Chul Kim, Hyuk-Jin Kim
{"title":"朝鲜半岛特有物种 Rorippa apetala Y.Y. Kim & B.U. Oh(十字花科:十字花属)的完整叶绿体基因组","authors":"Young-Ho Ha, Ye-Rim Choi, Ara Cho, Tae-Hee Kim, Young-Soo Kim, Sang-Chul Kim, Hyuk-Jin Kim","doi":"10.1016/j.japb.2023.10.007","DOIUrl":null,"url":null,"abstract":"<div><p>Here, we successfully assembled the complete chloroplast genome of <em>Rorippa apetala</em> Y.Y. Kim & B.U. Oh, a species endemic to the Korean Peninsula. The chloroplast genome was 154,818 bp long and exhibited a typical quadripartite structure comprising large single-copy (83,847 bp) and small single-copy (18,023 bp) regions, and a pair of inverted repeats (26,474 bp each). A total of 129 genes were encoded, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on the concatenated sequences of 78 protein-coding genes from 25 species revealed a close relationship between <em>R. apetala</em> and <em>Rorippa indica</em> (L.) Hiern, supported by full bootstrap value (100). Future studies employing more informative markers and a broader range of taxa will provide valuable insights into the biogeographical distribution of the genus <em>Rorippa</em> and offer a deeper understanding of the speciation process in <em>R. apetala.</em></p></div>","PeriodicalId":0,"journal":{"name":"","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2287884X23001152/pdfft?md5=b421855b0e64b48e81e9fa500ced8e0c&pid=1-s2.0-S2287884X23001152-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Complete chloroplast genome of Rorippa apetala Y.Y. Kim & B.U. Oh (Brassicales: Brassicaceae), a species endemic to the Korean Peninsula\",\"authors\":\"Young-Ho Ha, Ye-Rim Choi, Ara Cho, Tae-Hee Kim, Young-Soo Kim, Sang-Chul Kim, Hyuk-Jin Kim\",\"doi\":\"10.1016/j.japb.2023.10.007\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Here, we successfully assembled the complete chloroplast genome of <em>Rorippa apetala</em> Y.Y. Kim & B.U. Oh, a species endemic to the Korean Peninsula. The chloroplast genome was 154,818 bp long and exhibited a typical quadripartite structure comprising large single-copy (83,847 bp) and small single-copy (18,023 bp) regions, and a pair of inverted repeats (26,474 bp each). A total of 129 genes were encoded, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on the concatenated sequences of 78 protein-coding genes from 25 species revealed a close relationship between <em>R. apetala</em> and <em>Rorippa indica</em> (L.) Hiern, supported by full bootstrap value (100). Future studies employing more informative markers and a broader range of taxa will provide valuable insights into the biogeographical distribution of the genus <em>Rorippa</em> and offer a deeper understanding of the speciation process in <em>R. apetala.</em></p></div>\",\"PeriodicalId\":0,\"journal\":{\"name\":\"\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0,\"publicationDate\":\"2023-11-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2287884X23001152/pdfft?md5=b421855b0e64b48e81e9fa500ced8e0c&pid=1-s2.0-S2287884X23001152-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2287884X23001152\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2287884X23001152","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Complete chloroplast genome of Rorippa apetala Y.Y. Kim & B.U. Oh (Brassicales: Brassicaceae), a species endemic to the Korean Peninsula
Here, we successfully assembled the complete chloroplast genome of Rorippa apetala Y.Y. Kim & B.U. Oh, a species endemic to the Korean Peninsula. The chloroplast genome was 154,818 bp long and exhibited a typical quadripartite structure comprising large single-copy (83,847 bp) and small single-copy (18,023 bp) regions, and a pair of inverted repeats (26,474 bp each). A total of 129 genes were encoded, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on the concatenated sequences of 78 protein-coding genes from 25 species revealed a close relationship between R. apetala and Rorippa indica (L.) Hiern, supported by full bootstrap value (100). Future studies employing more informative markers and a broader range of taxa will provide valuable insights into the biogeographical distribution of the genus Rorippa and offer a deeper understanding of the speciation process in R. apetala.