相量标识符:基于云的Python笔记本相量胶片数据分析

IF 2.4 Q3 BIOPHYSICS Biophysical reports Pub Date : 2023-11-01 DOI:10.1016/j.bpr.2023.100135
Mario Bernardi, Francesco Cardarelli
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引用次数: 0

摘要

本文介绍了一种利用谷歌协作实验室(Colab)的创新方法,用于从各种样品(例如,试管,细胞,组织)和各种输入文件格式收集的相量荧光寿命成像显微镜(FLIM)数据的多功能分析。事实上,相位flim的广泛采用受到复杂仪器和数据分析需求的阻碍。我们的目的是通过基于云的解决方案,使研究人员更容易获得先进的FLIM分析,i)利用强大的计算资源,ii)消除硬件限制,iii)支持CPU和GPU处理。我们设想FLIM数据可访问性和潜力的范式转变,与人工智能驱动的FLIM分析领域保持一致。这种方法简化了FLIM数据处理,并为从研究细胞代谢到研究药物封装的各种应用打开了大门,使多个领域的研究人员受益。通过对自由分发的FLIM工具的比较分析,突出了这种方法在适应性、可伸缩性和开源性质方面的独特优势。
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Phasor Identifier: A Cloud-based Analysis of Phasor-FLIM Data on Python Notebooks
This paper introduces an innovative approach utilizing Google Colaboratory (Colab) for the versatile analysis of phasor Fluorescence Lifetime Imaging Microscopy (FLIM) data collected from various samples (e.g., cuvette, cells, tissues) and in various input file formats. In fact, phasor-FLIM widespread adoption has been hampered by complex instrumentation and data analysis requirements. We mean to make advanced FLIM analysis more accessible to researchers through a cloud-based solution that i) harnesses robust computational resources, ii) eliminates hardware limitations, iii) supports both CPU and GPU processing, We envision a paradigm shift in FLIM data accessibility and potential, aligning with the evolving field of AI-driven FLIM analysis. This approach simplifies FLIM data handling and opens doors for diverse applications, from studying cellular metabolism to investigating drug encapsulation, benefiting researchers across multiple domains. The comparative analysis of freely distributed FLIM tools highlights the unique advantages of this approach in terms of adaptability, scalability, and open-source nature.
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来源期刊
Biophysical reports
Biophysical reports Biophysics
CiteScore
2.40
自引率
0.00%
发文量
0
审稿时长
75 days
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