印度尼西亚苏门答腊岛和明打威群岛Davallia (davallaceae)的系统发育:来自trnL-F基因间间隔的证据

Q2 Agricultural and Biological Sciences Biodiversitas Pub Date : 2023-09-11 DOI:10.13057/biodiv/d240841
MILDAWATI MILDAWATI, SOBIR SOBIR, SULISTIJORINI SULISTIJORINI, TATIK CHIKMAWATI
{"title":"印度尼西亚苏门答腊岛和明打威群岛Davallia (davallaceae)的系统发育:来自trnL-F基因间间隔的证据","authors":"MILDAWATI MILDAWATI, SOBIR SOBIR, SULISTIJORINI SULISTIJORINI, TATIK CHIKMAWATI","doi":"10.13057/biodiv/d240841","DOIUrl":null,"url":null,"abstract":"Abstract. Mildawati, Sobir, Sulistijorini, Chikmawati T. 2023. Phylogeny of Davallia (Davalliaceae) from Sumatra and Mentawai Islands, Indonesia: evidence from trnL-F Intergenic Spacer. Biodiversitas 24: 4589-4596. Davallia is a member of the family Davalliaceae, which has a wide distribution in the Malesia region. The classification of this genus based on morphological and molecular data shows differences that cause the relationship among species to be debated until now. This study aimed to examine the phylogeny of Davallia from Sumatra and Mentawai Islands, Indonesia based on trnL-F intergenic spacer (IGS) sequence data. A total of 26 accessions representing 10 Davallia species were selected as ingroup and Oleandra articulata (Sw.) C.Presl as an outgroup was downloaded from Gen-Bank (accession number KF667613.1). Data analysis using the Maximum Parsimony (MP) method confirmed Davallia into 2 clades with divided into 7 subclades. Results showed that trnL-F IGS sequence as a non-coding gene explains the grouping species in Davallia. trnL-F IGS sequence can estimate species identity caused by changes in nucleotide bases from mutation. The MP analysis showed each species was resolved as monophyletic. Based on the phylogenetic tree, the longest branching was found in D. corniculata, suggesting that this species is the most primitive in the genus of Davallia in this region. Thus, the trnL-F marker effectively showed the relationship among species in Davallia in Sumatra and Mentawai Islands.","PeriodicalId":8894,"journal":{"name":"Biodiversitas","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2023-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Phylogeny of Davallia (Davalliaceae) from Sumatra and Mentawai Islands, Indonesia: evidence from trnL-F Intergenic Spacer\",\"authors\":\"MILDAWATI MILDAWATI, SOBIR SOBIR, SULISTIJORINI SULISTIJORINI, TATIK CHIKMAWATI\",\"doi\":\"10.13057/biodiv/d240841\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract. Mildawati, Sobir, Sulistijorini, Chikmawati T. 2023. Phylogeny of Davallia (Davalliaceae) from Sumatra and Mentawai Islands, Indonesia: evidence from trnL-F Intergenic Spacer. Biodiversitas 24: 4589-4596. Davallia is a member of the family Davalliaceae, which has a wide distribution in the Malesia region. The classification of this genus based on morphological and molecular data shows differences that cause the relationship among species to be debated until now. This study aimed to examine the phylogeny of Davallia from Sumatra and Mentawai Islands, Indonesia based on trnL-F intergenic spacer (IGS) sequence data. A total of 26 accessions representing 10 Davallia species were selected as ingroup and Oleandra articulata (Sw.) C.Presl as an outgroup was downloaded from Gen-Bank (accession number KF667613.1). Data analysis using the Maximum Parsimony (MP) method confirmed Davallia into 2 clades with divided into 7 subclades. Results showed that trnL-F IGS sequence as a non-coding gene explains the grouping species in Davallia. trnL-F IGS sequence can estimate species identity caused by changes in nucleotide bases from mutation. The MP analysis showed each species was resolved as monophyletic. Based on the phylogenetic tree, the longest branching was found in D. corniculata, suggesting that this species is the most primitive in the genus of Davallia in this region. Thus, the trnL-F marker effectively showed the relationship among species in Davallia in Sumatra and Mentawai Islands.\",\"PeriodicalId\":8894,\"journal\":{\"name\":\"Biodiversitas\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-09-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biodiversitas\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.13057/biodiv/d240841\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biodiversitas","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.13057/biodiv/d240841","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 0

摘要

摘要苏利斯提约里尼,齐克马瓦提。2023。印度尼西亚苏门答腊岛和明打威群岛Davallia (davallaceae)的系统发育:来自trnL-F基因间间隔的证据。生物多样性学报(自然科学版);Davallia是Davalliaceae的一员,在马来西亚地区有广泛的分布。该属的分类基于形态学和分子数据显示的差异导致物种之间的关系一直争论到现在。基于trnL-F基因间间隔(IGS)序列,研究了印尼苏门答腊和明打威群岛Davallia的系统发育。共选取了10个Davallia种的26份材料作为组内材料和Oleandra articulata (Sw.)。C.Presl作为外群从Gen-Bank下载(登录号KF667613.1)。采用最大简约法(Maximum Parsimony, MP)对数据进行分析,确定Davallia属分为2个支系,又分为7个亚支系。结果表明trnl - figs序列作为一个非编码基因解释了Davallia属植物的类群。trnl - figs序列可以估计由突变引起的核苷酸碱基变化引起的物种身份。MP分析表明,每个物种都是单系的。根据系统发育树,最长的分支在D. corniculata中发现,表明该物种是该地区Davallia属中最原始的物种。因此,trnL-F标记有效地显示了苏门答腊岛和明打威群岛Davallia种间的亲缘关系。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Phylogeny of Davallia (Davalliaceae) from Sumatra and Mentawai Islands, Indonesia: evidence from trnL-F Intergenic Spacer
Abstract. Mildawati, Sobir, Sulistijorini, Chikmawati T. 2023. Phylogeny of Davallia (Davalliaceae) from Sumatra and Mentawai Islands, Indonesia: evidence from trnL-F Intergenic Spacer. Biodiversitas 24: 4589-4596. Davallia is a member of the family Davalliaceae, which has a wide distribution in the Malesia region. The classification of this genus based on morphological and molecular data shows differences that cause the relationship among species to be debated until now. This study aimed to examine the phylogeny of Davallia from Sumatra and Mentawai Islands, Indonesia based on trnL-F intergenic spacer (IGS) sequence data. A total of 26 accessions representing 10 Davallia species were selected as ingroup and Oleandra articulata (Sw.) C.Presl as an outgroup was downloaded from Gen-Bank (accession number KF667613.1). Data analysis using the Maximum Parsimony (MP) method confirmed Davallia into 2 clades with divided into 7 subclades. Results showed that trnL-F IGS sequence as a non-coding gene explains the grouping species in Davallia. trnL-F IGS sequence can estimate species identity caused by changes in nucleotide bases from mutation. The MP analysis showed each species was resolved as monophyletic. Based on the phylogenetic tree, the longest branching was found in D. corniculata, suggesting that this species is the most primitive in the genus of Davallia in this region. Thus, the trnL-F marker effectively showed the relationship among species in Davallia in Sumatra and Mentawai Islands.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Biodiversitas
Biodiversitas Agricultural and Biological Sciences-Animal Science and Zoology
CiteScore
2.80
自引率
0.00%
发文量
471
审稿时长
6 weeks
期刊最新文献
Ethnobotany and conservation applications in the Noken making by the Sougb Tribe of West Papua, Indonesia Site assessment for a small-scale Javan rusa (Rusa timorensis) captive breeding in East Java, Indonesia Biological activities and chemical characterization of Lavandula angustifolia essential oil from Seraïdi, Northeastern Algeria Analysis Mycobacterium lepromatosis as the causative agent of diffuse lepromatous leprosy patient in Indonesia Diversity and spatial distribution of Order Diptera from Kuala Keniam National Park, Pahang, Malaysia
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1