{"title":"鱼迟缓爱德华氏菌感染外膜蛋白S2候选疫苗的计算机评价","authors":"Somanath Disha, Undiganalu Gangadharappa Yathisha, Mave Harshitha, Biswajit Maiti","doi":"10.1002/naaq.10322","DOIUrl":null,"url":null,"abstract":"Abstract Edwardsiella tarda is one of the primary emerging pathogens in fish aquaculture, responsible for Edwardsiellosis. The disease leads to significant economic loss to the farmers. Development of effective vaccines can minimise the disease burden. The type of vaccinations that are currently at the center of the most significant research are subunit vaccines. Outer membrane proteins (OMPs), being a component of the bacteria are very well known to be effective at stimulating immune responses in the host. In this study, the gene encoding for outer membrane protein S2 (OmpS2) of E. tarda was identified, cloned, and sequenced, followed by in silico analysis. The structure and sub‐cellular localization of the protein was first confirmed. Homology modelling of the whole protein was done and checked for its eligibility as a vaccine candidate. This was followed by identifying antigenic sites, B cell epitopes, and cytotoxic T‐lymphocyte epitopes on OmpS2. We obtained a few distinct vaccine peptides from the OmpS2. The complete genome of the fish pathogen E. tarda was subjected to genome analysis to identify potential epitopes that would bind to the fish major histocompatibility complex (MHC) molecule to elicit both humoral and cell‐mediated immune responses. This study provides valuable insights to consider OmpS2 as a potential vaccine candidate against E. tarda infection .","PeriodicalId":19258,"journal":{"name":"North American Journal of Aquaculture","volume":"2021 1","pages":"0"},"PeriodicalIF":1.4000,"publicationDate":"2023-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>In silico</i> Evaluation of Outer Membrane Protein <scp>S2</scp> as a Suitable Vaccine Candidate Against <i>Edwardsiella tarda</i> Infection of Fish\",\"authors\":\"Somanath Disha, Undiganalu Gangadharappa Yathisha, Mave Harshitha, Biswajit Maiti\",\"doi\":\"10.1002/naaq.10322\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract Edwardsiella tarda is one of the primary emerging pathogens in fish aquaculture, responsible for Edwardsiellosis. The disease leads to significant economic loss to the farmers. Development of effective vaccines can minimise the disease burden. The type of vaccinations that are currently at the center of the most significant research are subunit vaccines. Outer membrane proteins (OMPs), being a component of the bacteria are very well known to be effective at stimulating immune responses in the host. In this study, the gene encoding for outer membrane protein S2 (OmpS2) of E. tarda was identified, cloned, and sequenced, followed by in silico analysis. The structure and sub‐cellular localization of the protein was first confirmed. Homology modelling of the whole protein was done and checked for its eligibility as a vaccine candidate. This was followed by identifying antigenic sites, B cell epitopes, and cytotoxic T‐lymphocyte epitopes on OmpS2. We obtained a few distinct vaccine peptides from the OmpS2. The complete genome of the fish pathogen E. tarda was subjected to genome analysis to identify potential epitopes that would bind to the fish major histocompatibility complex (MHC) molecule to elicit both humoral and cell‐mediated immune responses. This study provides valuable insights to consider OmpS2 as a potential vaccine candidate against E. tarda infection .\",\"PeriodicalId\":19258,\"journal\":{\"name\":\"North American Journal of Aquaculture\",\"volume\":\"2021 1\",\"pages\":\"0\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2023-10-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"North American Journal of Aquaculture\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1002/naaq.10322\",\"RegionNum\":4,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"FISHERIES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"North American Journal of Aquaculture","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1002/naaq.10322","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"FISHERIES","Score":null,"Total":0}
In silico Evaluation of Outer Membrane Protein S2 as a Suitable Vaccine Candidate Against Edwardsiella tarda Infection of Fish
Abstract Edwardsiella tarda is one of the primary emerging pathogens in fish aquaculture, responsible for Edwardsiellosis. The disease leads to significant economic loss to the farmers. Development of effective vaccines can minimise the disease burden. The type of vaccinations that are currently at the center of the most significant research are subunit vaccines. Outer membrane proteins (OMPs), being a component of the bacteria are very well known to be effective at stimulating immune responses in the host. In this study, the gene encoding for outer membrane protein S2 (OmpS2) of E. tarda was identified, cloned, and sequenced, followed by in silico analysis. The structure and sub‐cellular localization of the protein was first confirmed. Homology modelling of the whole protein was done and checked for its eligibility as a vaccine candidate. This was followed by identifying antigenic sites, B cell epitopes, and cytotoxic T‐lymphocyte epitopes on OmpS2. We obtained a few distinct vaccine peptides from the OmpS2. The complete genome of the fish pathogen E. tarda was subjected to genome analysis to identify potential epitopes that would bind to the fish major histocompatibility complex (MHC) molecule to elicit both humoral and cell‐mediated immune responses. This study provides valuable insights to consider OmpS2 as a potential vaccine candidate against E. tarda infection .
期刊介绍:
The North American Journal of Aquaculture publishes papers on new research and practical experience in all areas of intensive and extensive fish culture. Topics include broodstock selection and spawning, nutrition and feeding, health and water quality, facilities and production technology, and the management of ponds, pens, and raceways.
The journal will consider papers dealing with ways to improve the husbandry of any aquatic species—marine or freshwater, vertebrate or invertebrate—raised for commercial, scientific, recreational, enhancement, or restoration purposes that may be of interest to practitioners in North America. Its scope includes both basic and applied science, but applied scientific endeavors—including practical experiences, descriptive studies, and other nontraditional, but pertinent works—are emphasized.