谱系对在空间Λ-Fleming-Viot过程中的合并率

IF 1.2 4区 生物学 Q4 ECOLOGY Theoretical Population Biology Pub Date : 2022-08-01 DOI:10.1016/j.tpb.2022.05.002
Johannes Wirtz, Stéphane Guindon
{"title":"谱系对在空间Λ-Fleming-Viot过程中的合并率","authors":"Johannes Wirtz,&nbsp;Stéphane Guindon","doi":"10.1016/j.tpb.2022.05.002","DOIUrl":null,"url":null,"abstract":"<div><p>We revisit the Spatial <span><math><mi>Λ</mi></math></span>-Fleming–Viot process introduced in Barton and Kelleher (2010). Particularly, we are interested in the time <span><math><msub><mrow><mi>T</mi></mrow><mrow><mn>0</mn></mrow></msub></math></span> to the most recent common ancestor for two lineages. We distinguish between the cases where the process acts on the two-dimensional plane and on a finite rectangle. Utilizing a differential equation linking <span><math><msub><mrow><mi>T</mi></mrow><mrow><mn>0</mn></mrow></msub></math></span> with the physical distance between the lineages, we arrive at computationally efficient and reasonably accurate approximation schemes for both cases. Furthermore, our analysis enables us to address the question of whether the genealogical process of the model “comes down from infinity”, which has been partly answered before in Véber and Wakolbinger (2015).</p></div>","PeriodicalId":49437,"journal":{"name":"Theoretical Population Biology","volume":"146 ","pages":"Pages 15-28"},"PeriodicalIF":1.2000,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0040580922000314/pdfft?md5=f64a4125bbcae9606e3c859de5dc9375&pid=1-s2.0-S0040580922000314-main.pdf","citationCount":"2","resultStr":"{\"title\":\"Rate of coalescence of lineage pairs in the Spatial Λ-Fleming–Viot process\",\"authors\":\"Johannes Wirtz,&nbsp;Stéphane Guindon\",\"doi\":\"10.1016/j.tpb.2022.05.002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>We revisit the Spatial <span><math><mi>Λ</mi></math></span>-Fleming–Viot process introduced in Barton and Kelleher (2010). Particularly, we are interested in the time <span><math><msub><mrow><mi>T</mi></mrow><mrow><mn>0</mn></mrow></msub></math></span> to the most recent common ancestor for two lineages. We distinguish between the cases where the process acts on the two-dimensional plane and on a finite rectangle. Utilizing a differential equation linking <span><math><msub><mrow><mi>T</mi></mrow><mrow><mn>0</mn></mrow></msub></math></span> with the physical distance between the lineages, we arrive at computationally efficient and reasonably accurate approximation schemes for both cases. Furthermore, our analysis enables us to address the question of whether the genealogical process of the model “comes down from infinity”, which has been partly answered before in Véber and Wakolbinger (2015).</p></div>\",\"PeriodicalId\":49437,\"journal\":{\"name\":\"Theoretical Population Biology\",\"volume\":\"146 \",\"pages\":\"Pages 15-28\"},\"PeriodicalIF\":1.2000,\"publicationDate\":\"2022-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S0040580922000314/pdfft?md5=f64a4125bbcae9606e3c859de5dc9375&pid=1-s2.0-S0040580922000314-main.pdf\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Theoretical Population Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0040580922000314\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Theoretical Population Biology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0040580922000314","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 2

摘要

我们回顾巴顿和凯莱赫(2010)介绍的空间Λ-Fleming-Viot过程。我们特别感兴趣的是两个世系的共同祖先到最近的时间。我们区分了过程作用于二维平面和有限矩形的情况。利用将T0与谱系之间的物理距离联系起来的微分方程,我们得到了两种情况下计算效率高且相当准确的近似方案。此外,我们的分析使我们能够解决这个问题,即模型的谱系过程是否“来自无限”,这个问题在vsamuber和Wakolbinger(2015)之前已经得到了部分回答。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Rate of coalescence of lineage pairs in the Spatial Λ-Fleming–Viot process

We revisit the Spatial Λ-Fleming–Viot process introduced in Barton and Kelleher (2010). Particularly, we are interested in the time T0 to the most recent common ancestor for two lineages. We distinguish between the cases where the process acts on the two-dimensional plane and on a finite rectangle. Utilizing a differential equation linking T0 with the physical distance between the lineages, we arrive at computationally efficient and reasonably accurate approximation schemes for both cases. Furthermore, our analysis enables us to address the question of whether the genealogical process of the model “comes down from infinity”, which has been partly answered before in Véber and Wakolbinger (2015).

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Theoretical Population Biology
Theoretical Population Biology 生物-进化生物学
CiteScore
2.50
自引率
14.30%
发文量
43
审稿时长
6-12 weeks
期刊介绍: An interdisciplinary journal, Theoretical Population Biology presents articles on theoretical aspects of the biology of populations, particularly in the areas of demography, ecology, epidemiology, evolution, and genetics. Emphasis is on the development of mathematical theory and models that enhance the understanding of biological phenomena. Articles highlight the motivation and significance of the work for advancing progress in biology, relying on a substantial mathematical effort to obtain biological insight. The journal also presents empirical results and computational and statistical methods directly impinging on theoretical problems in population biology.
期刊最新文献
A stochastic field theory for the evolution of quantitative traits in finite populations. Aggregation unveiled: A sequential modelling approach to bark beetle outbreaks An almost infinite sites model A simple model and rules for the evolution of microbial mutualistic symbiosis with positive fitness feedbacks Sharp habitat shifts, evolutionary tipping points and rescue: Quantifying the perilous path of a specialist species towards a refugium in a changing environment
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1