利用基于张量的机器学习对多模态核磁共振成像连接组数据进行可卡因使用预测

IF 2.7 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Neural Computation Pub Date : 2023-12-12 DOI:10.1162/neco_a_01623
Anru R. Zhang;Ryan P. Bell;Chen An;Runshi Tang;Shana A. Hall;Cliburn Chan;Kareem Al-Khalil;Christina S. Meade
{"title":"利用基于张量的机器学习对多模态核磁共振成像连接组数据进行可卡因使用预测","authors":"Anru R. Zhang;Ryan P. Bell;Chen An;Runshi Tang;Shana A. Hall;Cliburn Chan;Kareem Al-Khalil;Christina S. Meade","doi":"10.1162/neco_a_01623","DOIUrl":null,"url":null,"abstract":"This letter considers the use of machine learning algorithms for predicting cocaine use based on magnetic resonance imaging (MRI) connectomic data. The study used functional MRI (fMRI) and diffusion MRI (dMRI) data collected from 275 individuals, which was then parcellated into 246 regions of interest (ROIs) using the Brainnetome atlas. After data preprocessing, the data sets were transformed into tensor form. We developed a tensor-based unsupervised machine learning algorithm to reduce the size of the data tensor from 275 (individuals) × 2 (fMRI and dMRI) × 246 (ROIs) × 246 (ROIs) to 275 (individuals) × 2 (fMRI and dMRI) × 6 (clusters) × 6 (clusters). This was achieved by applying the high-order Lloyd algorithm to group the ROI data into six clusters. Features were extracted from the reduced tensor and combined with demographic features (age, gender, race, and HIV status). The resulting data set was used to train a Catboost model using subsampling and nested cross-validation techniques, which achieved a prediction accuracy of 0.857 for identifying cocaine users. The model was also compared with other models, and the feature importance of the model was presented. Overall, this study highlights the potential for using tensor-based machine learning algorithms to predict cocaine use based on MRI connectomic data and presents a promising approach for identifying individuals at risk of substance abuse.","PeriodicalId":54731,"journal":{"name":"Neural Computation","volume":null,"pages":null},"PeriodicalIF":2.7000,"publicationDate":"2023-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Cocaine Use Prediction With Tensor-Based Machine Learning on Multimodal MRI Connectome Data\",\"authors\":\"Anru R. Zhang;Ryan P. Bell;Chen An;Runshi Tang;Shana A. Hall;Cliburn Chan;Kareem Al-Khalil;Christina S. Meade\",\"doi\":\"10.1162/neco_a_01623\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"This letter considers the use of machine learning algorithms for predicting cocaine use based on magnetic resonance imaging (MRI) connectomic data. The study used functional MRI (fMRI) and diffusion MRI (dMRI) data collected from 275 individuals, which was then parcellated into 246 regions of interest (ROIs) using the Brainnetome atlas. After data preprocessing, the data sets were transformed into tensor form. We developed a tensor-based unsupervised machine learning algorithm to reduce the size of the data tensor from 275 (individuals) × 2 (fMRI and dMRI) × 246 (ROIs) × 246 (ROIs) to 275 (individuals) × 2 (fMRI and dMRI) × 6 (clusters) × 6 (clusters). This was achieved by applying the high-order Lloyd algorithm to group the ROI data into six clusters. Features were extracted from the reduced tensor and combined with demographic features (age, gender, race, and HIV status). The resulting data set was used to train a Catboost model using subsampling and nested cross-validation techniques, which achieved a prediction accuracy of 0.857 for identifying cocaine users. The model was also compared with other models, and the feature importance of the model was presented. Overall, this study highlights the potential for using tensor-based machine learning algorithms to predict cocaine use based on MRI connectomic data and presents a promising approach for identifying individuals at risk of substance abuse.\",\"PeriodicalId\":54731,\"journal\":{\"name\":\"Neural Computation\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2023-12-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Neural Computation\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://ieeexplore.ieee.org/document/10535099/\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Neural Computation","FirstCategoryId":"94","ListUrlMain":"https://ieeexplore.ieee.org/document/10535099/","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
引用次数: 0

摘要

这封信探讨了根据磁共振成像(MRI)连接组学数据使用机器学习算法预测可卡因使用情况的问题。研究使用了从 275 人身上收集的功能磁共振成像(fMRI)和弥散磁共振成像(dMRI)数据,然后使用 Brainnetome 图集将这些数据分割成 246 个感兴趣区域(ROI)。数据预处理后,数据集被转换成张量形式。我们开发了一种基于张量的无监督机器学习算法,将数据张量的大小从 275(个体)×2(fMRI 和 dMRI)×246(感兴趣区)×246(感兴趣区)缩小到 275(个体)×2(fMRI 和 dMRI)×6(簇)×6(簇)。这是通过应用高阶 Lloyd 算法将 ROI 数据分成六个簇来实现的。从缩小的张量中提取特征,并与人口特征(年龄、性别、种族和 HIV 感染状况)相结合。利用子采样和嵌套交叉验证技术对所得到的数据集进行 Catboost 模型训练,该模型在识别可卡因使用者方面的预测准确率达到了 0.857。该模型还与其他模型进行了比较,并介绍了该模型的重要特征。总之,这项研究强调了使用基于张量的机器学习算法根据核磁共振成像连接组学数据预测可卡因使用情况的潜力,并为识别有药物滥用风险的个体提供了一种很有前途的方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Cocaine Use Prediction With Tensor-Based Machine Learning on Multimodal MRI Connectome Data
This letter considers the use of machine learning algorithms for predicting cocaine use based on magnetic resonance imaging (MRI) connectomic data. The study used functional MRI (fMRI) and diffusion MRI (dMRI) data collected from 275 individuals, which was then parcellated into 246 regions of interest (ROIs) using the Brainnetome atlas. After data preprocessing, the data sets were transformed into tensor form. We developed a tensor-based unsupervised machine learning algorithm to reduce the size of the data tensor from 275 (individuals) × 2 (fMRI and dMRI) × 246 (ROIs) × 246 (ROIs) to 275 (individuals) × 2 (fMRI and dMRI) × 6 (clusters) × 6 (clusters). This was achieved by applying the high-order Lloyd algorithm to group the ROI data into six clusters. Features were extracted from the reduced tensor and combined with demographic features (age, gender, race, and HIV status). The resulting data set was used to train a Catboost model using subsampling and nested cross-validation techniques, which achieved a prediction accuracy of 0.857 for identifying cocaine users. The model was also compared with other models, and the feature importance of the model was presented. Overall, this study highlights the potential for using tensor-based machine learning algorithms to predict cocaine use based on MRI connectomic data and presents a promising approach for identifying individuals at risk of substance abuse.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Neural Computation
Neural Computation 工程技术-计算机:人工智能
CiteScore
6.30
自引率
3.40%
发文量
83
审稿时长
3.0 months
期刊介绍: Neural Computation is uniquely positioned at the crossroads between neuroscience and TMCS and welcomes the submission of original papers from all areas of TMCS, including: Advanced experimental design; Analysis of chemical sensor data; Connectomic reconstructions; Analysis of multielectrode and optical recordings; Genetic data for cell identity; Analysis of behavioral data; Multiscale models; Analysis of molecular mechanisms; Neuroinformatics; Analysis of brain imaging data; Neuromorphic engineering; Principles of neural coding, computation, circuit dynamics, and plasticity; Theories of brain function.
期刊最新文献
Associative Learning and Active Inference. Deep Nonnegative Matrix Factorization with Beta Divergences. KLIF: An Optimized Spiking Neuron Unit for Tuning Surrogate Gradient Function. ℓ 1 -Regularized ICA: A Novel Method for Analysis of Task-Related fMRI Data. Latent Space Bayesian Optimization With Latent Data Augmentation for Enhanced Exploration.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1