通过作物模型分解复杂性状,支持品种推荐。一个概念的证明,重点是物候和大田豌豆

IF 2.6 3区 农林科学 Q1 AGRONOMY Italian Journal of Agronomy Pub Date : 2022-01-18 DOI:10.4081/ija.2022.1998
Livia Paleari,Ermes Movedi,Fosco M. Vesely,Matteo Tettamanti,Daniele Piva,Roberto Confalonieri
{"title":"通过作物模型分解复杂性状,支持品种推荐。一个概念的证明,重点是物候和大田豌豆","authors":"Livia Paleari,Ermes Movedi,Fosco M. Vesely,Matteo Tettamanti,Daniele Piva,Roberto Confalonieri","doi":"10.4081/ija.2022.1998","DOIUrl":null,"url":null,"abstract":"Cultivar recommendation is crucial for achieving high and stable yields, and it can be successfully supported by crop models because of their capability of exploring genotype × environment × management interactions. Different modelling approaches have been developed to this end, mostly relying on dedicated field trials to characterize the germplasm of interest. Here, we show how even data routinely collected in operational contexts can be used for model-based cultivar recommendation, with a case study on phenological traits and field pea (Pisum sativum L.). Eight hundred and four datasets including days from sowing to plant emergence, first flower, and maturity were collected in Northern Italy from 2017 to 2020 and they were used to optimize six parameters (base, optimum, and maximum temperature for development, growing degree days to reach emergence, flowering and maturity) of the crop model WOFOST-GT2 for 13 cultivars. This allowed obtaining the phenotypic profiles for these cultivars at functional traits level, without the need of carrying out dedicated phenotypizations. Sensitivity analysis (SA) techniques (E-FAST) and the statistical distributions of the optimized parameters were used to design pea ideotypes able to maximize yields and yield stability in 24 agro-climatic contexts (three soil conditions × two sowing times × four agro-climatic classes). For each of these contexts, the 13 cultivars were ranked according to their similarity to the ideotype based on the weighted Euclidean distance. Results of SA identified growing degree days to reach flowering as the trait mainly affecting crop productivity, although cardinal temperatures also played a role, especially in case of early sowings. This reflected in the ideotypes and, therefore, in cultivar ranking, leading to recommend a panel of cultivars characterized by low base temperature and high thermal requirements to reach flowering. Despite the limits of the study, which is focused only on phenological traits, it represents an extension of available approaches for model-aided cultivar recommendation, given the methodology we propose is able to take full advantage of the potentialities of crop models without requiring dedicated experiments aimed at profiling the germplasm of interest at the level of functional traits.","PeriodicalId":14618,"journal":{"name":"Italian Journal of Agronomy","volume":null,"pages":null},"PeriodicalIF":2.6000,"publicationDate":"2022-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Decomposing complex traits through crop modelling to support cultivar recommendation. A proof of concept with focus on phenology and field pea\",\"authors\":\"Livia Paleari,Ermes Movedi,Fosco M. Vesely,Matteo Tettamanti,Daniele Piva,Roberto Confalonieri\",\"doi\":\"10.4081/ija.2022.1998\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Cultivar recommendation is crucial for achieving high and stable yields, and it can be successfully supported by crop models because of their capability of exploring genotype × environment × management interactions. Different modelling approaches have been developed to this end, mostly relying on dedicated field trials to characterize the germplasm of interest. Here, we show how even data routinely collected in operational contexts can be used for model-based cultivar recommendation, with a case study on phenological traits and field pea (Pisum sativum L.). Eight hundred and four datasets including days from sowing to plant emergence, first flower, and maturity were collected in Northern Italy from 2017 to 2020 and they were used to optimize six parameters (base, optimum, and maximum temperature for development, growing degree days to reach emergence, flowering and maturity) of the crop model WOFOST-GT2 for 13 cultivars. This allowed obtaining the phenotypic profiles for these cultivars at functional traits level, without the need of carrying out dedicated phenotypizations. Sensitivity analysis (SA) techniques (E-FAST) and the statistical distributions of the optimized parameters were used to design pea ideotypes able to maximize yields and yield stability in 24 agro-climatic contexts (three soil conditions × two sowing times × four agro-climatic classes). For each of these contexts, the 13 cultivars were ranked according to their similarity to the ideotype based on the weighted Euclidean distance. Results of SA identified growing degree days to reach flowering as the trait mainly affecting crop productivity, although cardinal temperatures also played a role, especially in case of early sowings. This reflected in the ideotypes and, therefore, in cultivar ranking, leading to recommend a panel of cultivars characterized by low base temperature and high thermal requirements to reach flowering. Despite the limits of the study, which is focused only on phenological traits, it represents an extension of available approaches for model-aided cultivar recommendation, given the methodology we propose is able to take full advantage of the potentialities of crop models without requiring dedicated experiments aimed at profiling the germplasm of interest at the level of functional traits.\",\"PeriodicalId\":14618,\"journal\":{\"name\":\"Italian Journal of Agronomy\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2022-01-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Italian Journal of Agronomy\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.4081/ija.2022.1998\",\"RegionNum\":3,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"AGRONOMY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Italian Journal of Agronomy","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.4081/ija.2022.1998","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"AGRONOMY","Score":null,"Total":0}
引用次数: 0

摘要

品种推荐是实现高产稳产的关键,由于作物模型能够探索基因型×环境×管理的相互作用,因此可以成功地支持品种推荐。为此目的,已经开发了不同的建模方法,主要依靠专门的田间试验来表征感兴趣的种质。在这里,我们展示了即使是在操作环境中常规收集的数据也可以用于基于模型的品种推荐,并以物候性状和大田豌豆(Pisum sativum L.)为例进行了研究。利用2017 - 2020年在意大利北部采集的播种至植株出苗、首次开花、成熟天数共844个数据集,对13个品种的WOFOST-GT2作物模型的6个参数(发育基础温度、最适温度和最高温度、达到出苗、开花和成熟的生长天数)进行了优化。这允许在功能性状水平上获得这些品种的表型谱,而不需要进行专门的表型化。利用敏感性分析(E-FAST)技术和优化参数的统计分布,设计了24种农业气候条件(3种土壤条件× 2种播种次数× 4种农业气候类别)下产量和产量稳定性最高的豌豆理想型。基于加权欧几里得距离,对13个品种的理想型相似性进行排序。SA结果表明,主要影响作物产量的性状是开花的生长程度天数,尽管基本温度也起作用,特别是在早播的情况下。这反映在理想型中,因此在品种排名中,导致推荐一组以低底温和高热要求为特征的品种以达到开花。尽管该研究仅关注物候性状,但它代表了模型辅助栽培推荐的可用方法的扩展,因为我们提出的方法能够充分利用作物模型的潜力,而不需要专门的实验,目的是在功能性状水平上分析感兴趣的种质。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Decomposing complex traits through crop modelling to support cultivar recommendation. A proof of concept with focus on phenology and field pea
Cultivar recommendation is crucial for achieving high and stable yields, and it can be successfully supported by crop models because of their capability of exploring genotype × environment × management interactions. Different modelling approaches have been developed to this end, mostly relying on dedicated field trials to characterize the germplasm of interest. Here, we show how even data routinely collected in operational contexts can be used for model-based cultivar recommendation, with a case study on phenological traits and field pea (Pisum sativum L.). Eight hundred and four datasets including days from sowing to plant emergence, first flower, and maturity were collected in Northern Italy from 2017 to 2020 and they were used to optimize six parameters (base, optimum, and maximum temperature for development, growing degree days to reach emergence, flowering and maturity) of the crop model WOFOST-GT2 for 13 cultivars. This allowed obtaining the phenotypic profiles for these cultivars at functional traits level, without the need of carrying out dedicated phenotypizations. Sensitivity analysis (SA) techniques (E-FAST) and the statistical distributions of the optimized parameters were used to design pea ideotypes able to maximize yields and yield stability in 24 agro-climatic contexts (three soil conditions × two sowing times × four agro-climatic classes). For each of these contexts, the 13 cultivars were ranked according to their similarity to the ideotype based on the weighted Euclidean distance. Results of SA identified growing degree days to reach flowering as the trait mainly affecting crop productivity, although cardinal temperatures also played a role, especially in case of early sowings. This reflected in the ideotypes and, therefore, in cultivar ranking, leading to recommend a panel of cultivars characterized by low base temperature and high thermal requirements to reach flowering. Despite the limits of the study, which is focused only on phenological traits, it represents an extension of available approaches for model-aided cultivar recommendation, given the methodology we propose is able to take full advantage of the potentialities of crop models without requiring dedicated experiments aimed at profiling the germplasm of interest at the level of functional traits.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
4.20
自引率
4.50%
发文量
25
审稿时长
10 weeks
期刊介绍: The Italian Journal of Agronomy (IJA) is the official journal of the Italian Society for Agronomy. It publishes quarterly original articles and reviews reporting experimental and theoretical contributions to agronomy and crop science, with main emphasis on original articles from Italy and countries having similar agricultural conditions. The journal deals with all aspects of Agricultural and Environmental Sciences, the interactions between cropping systems and sustainable development. Multidisciplinary articles that bridge agronomy with ecology, environmental and social sciences are also welcome.
期刊最新文献
Super high-density olive orchard system affects the main olive crop pests Nutrient-coated urea mitigates deleterious impacts of salinity and supports wheat performance by enhancing antioxidant activities, photosynthetic performance and nitrogen use efficiency Participatory ecodesign of crop management based on Life Cycle Assessment: an approach to inform the strategy of a Protected Denomination of Origin. A case study in viticulture Buckwheat (Fagopyrum esculentum Moench.) as an emerging companion crop in annual cropping systems: a systematic review Co-designing innovative cropping systems with stakeholders
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1