全基因组分析揭示菊花集落中 ABI3/VP1 家族相关基因对外源乙烯处理的响应模式

IF 3.1 3区 农林科学 Q1 HORTICULTURE Horticulturae Pub Date : 2023-12-07 DOI:10.3390/horticulturae9121316
Hua Cheng, Yiman Yang, Jiayu Li, Sumei Chen, Fadi Chen, Jiafu Jiang
{"title":"全基因组分析揭示菊花集落中 ABI3/VP1 家族相关基因对外源乙烯处理的响应模式","authors":"Hua Cheng, Yiman Yang, Jiayu Li, Sumei Chen, Fadi Chen, Jiafu Jiang","doi":"10.3390/horticulturae9121316","DOIUrl":null,"url":null,"abstract":"The transcription factor family RELATED to ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1(VP1) (RAV) is a plant-specific group of transcription factors that only contain a conserved B3 DNA binding domain or both their own B3 and APETALA2 (AP2) domains belonging to the B3 superfamily, which is vital for plant growth, development, and stress response. Although genome-wide characterization and analysis of the RAV family genes have been conducted in some species, they have not been systematically reported in chrysanthemums. Here, we found six RAV family genes in the diploid Chrysanthemum seticuspe genome. Based on domain similarity and homology comparison analyses, RAV genes in Chrysanthemum were categorized into two clades: Class-I and Class-II. Conserved motif analysis revealed that all CsRAV proteins contained the B3 repression domain. An analysis of cis-acting elements suggested that CsRAV family genes may play parts in light, hormonal, abiotic stress, growth, and developmental processes. Furthermore, quantitative RT-PCR analysis validated that all six CsRAV genes responded to ethylene treatment, whereas the genes in the Class-I clade responded most significantly to ethylene. In summary, the above results provided a conceptual basis for further investigation into the functions of CsRAV genes in C. seticuspe.","PeriodicalId":13034,"journal":{"name":"Horticulturae","volume":"43 1","pages":""},"PeriodicalIF":3.1000,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-Wide Analysis of the Related to ABI3/VP1 Family Genes in Chrysanthemum seticuspe Reveals Their Response Patterns to Exogenous Ethylene Treatment\",\"authors\":\"Hua Cheng, Yiman Yang, Jiayu Li, Sumei Chen, Fadi Chen, Jiafu Jiang\",\"doi\":\"10.3390/horticulturae9121316\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The transcription factor family RELATED to ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1(VP1) (RAV) is a plant-specific group of transcription factors that only contain a conserved B3 DNA binding domain or both their own B3 and APETALA2 (AP2) domains belonging to the B3 superfamily, which is vital for plant growth, development, and stress response. Although genome-wide characterization and analysis of the RAV family genes have been conducted in some species, they have not been systematically reported in chrysanthemums. Here, we found six RAV family genes in the diploid Chrysanthemum seticuspe genome. Based on domain similarity and homology comparison analyses, RAV genes in Chrysanthemum were categorized into two clades: Class-I and Class-II. Conserved motif analysis revealed that all CsRAV proteins contained the B3 repression domain. An analysis of cis-acting elements suggested that CsRAV family genes may play parts in light, hormonal, abiotic stress, growth, and developmental processes. Furthermore, quantitative RT-PCR analysis validated that all six CsRAV genes responded to ethylene treatment, whereas the genes in the Class-I clade responded most significantly to ethylene. In summary, the above results provided a conceptual basis for further investigation into the functions of CsRAV genes in C. seticuspe.\",\"PeriodicalId\":13034,\"journal\":{\"name\":\"Horticulturae\",\"volume\":\"43 1\",\"pages\":\"\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2023-12-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Horticulturae\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.3390/horticulturae9121316\",\"RegionNum\":3,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"HORTICULTURE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Horticulturae","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.3390/horticulturae9121316","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"HORTICULTURE","Score":null,"Total":0}
引用次数: 0

摘要

ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1(VP1) (RAV)相关转录因子家族是一类植物特异性的转录因子,属于B3超家族,仅包含一个保守的B3 DNA结合域或其自身的B3和aptala2 (AP2)结构域,对植物的生长、发育和胁迫反应至关重要。虽然RAV家族基因的全基因组鉴定和分析已经在一些物种中进行,但在菊花中尚未有系统的报道。本研究在二倍体菊花基因组中发现了6个RAV家族基因。通过结构域相似性和同源性比较分析,将菊花RAV基因分为i类和ii类两个分支。保守基序分析显示,所有CsRAV蛋白都含有B3抑制结构域。对顺式作用元件的分析表明,CsRAV家族基因可能在光照、激素、非生物胁迫、生长和发育过程中发挥作用。此外,定量RT-PCR分析证实,所有6个CsRAV基因都对乙烯处理有反应,而i类分支的基因对乙烯的反应最为显著。综上所述,上述结果为进一步研究棘球蚴CsRAV基因的功能提供了概念基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Genome-Wide Analysis of the Related to ABI3/VP1 Family Genes in Chrysanthemum seticuspe Reveals Their Response Patterns to Exogenous Ethylene Treatment
The transcription factor family RELATED to ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1(VP1) (RAV) is a plant-specific group of transcription factors that only contain a conserved B3 DNA binding domain or both their own B3 and APETALA2 (AP2) domains belonging to the B3 superfamily, which is vital for plant growth, development, and stress response. Although genome-wide characterization and analysis of the RAV family genes have been conducted in some species, they have not been systematically reported in chrysanthemums. Here, we found six RAV family genes in the diploid Chrysanthemum seticuspe genome. Based on domain similarity and homology comparison analyses, RAV genes in Chrysanthemum were categorized into two clades: Class-I and Class-II. Conserved motif analysis revealed that all CsRAV proteins contained the B3 repression domain. An analysis of cis-acting elements suggested that CsRAV family genes may play parts in light, hormonal, abiotic stress, growth, and developmental processes. Furthermore, quantitative RT-PCR analysis validated that all six CsRAV genes responded to ethylene treatment, whereas the genes in the Class-I clade responded most significantly to ethylene. In summary, the above results provided a conceptual basis for further investigation into the functions of CsRAV genes in C. seticuspe.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Horticulturae
Horticulturae HORTICULTURE-
CiteScore
3.50
自引率
19.40%
发文量
998
期刊最新文献
An Innovative Co-Cultivation of Microalgae and Actinomycete-Inoculated Lettuce in a Hydroponic Deep-Water Culture System for the Sustainable Development of a Food–Agriculture–Energy Nexus Growth, Triterpene Glycosides, and Antioxidant Activities of Centella asiatica L. Urban Grown in a Controlled Environment with Different Nutrient Solution Formulations and LED Light Intensities Melatonin Promotes Accumulation of Resveratrol and Its Derivatives through Upregulation of PAL, 4CL, C4H, and STS in Grape Seeds Transcription Factor MdPLT1 Involved Adventitious Root Initiation in Apple Rootstocks Assessment of Phytotoxicity in Untreated and Electrochemically Treated Leachates through the Analysis of Early Seed Growth and Inductively Coupled Plasma-Optical Emission Spectroscopy Characterization
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1