细胞迁移空间离散模型中的人为模式及其缓解方法

Q2 Agricultural and Biological Sciences Biomath Pub Date : 2023-12-01 DOI:10.55630/j.biomath.2023.11.177
J. Nava-Sedeño, Simon Syga, Andreas Deutsch
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引用次数: 0

摘要

众所周知,扩散运动的几个离散模型表现出棋盘伪影,这在它们的连续模拟中是不存在的。我们研究了离散热方程中棋盘伪迹的起源,并表明当遵循两种策略中的任何一种时,该伪迹随时间呈指数衰减:考虑每个晶格位置的当前状态以确定其自身的未来状态(自贡献),或使用非方形晶格几何。随后,我们研究了这些策略对生物细胞迁移的非线性模型的影响,这些模型具有两种细胞-细胞相互作用:粘附和极性速度对准。在粘合剂相互作用的情况下,我们表明与图案形成相关的生长模式在长期内掩盖了伪影;尽管如此,按照离散热方程中的相同策略,仍然可以完全防止伪影。另一方面,对于极速度对准,我们表明伪影不仅加强了,而且在这个模型中还可能出现新的伪影,这些伪影在以前的模型中没有观察到。我们发现点阵几何策略可以很好地减轻伪影。然而,自贡献策略必须更加谨慎地应用:点阵点应该对它们自己的密度和速度值都有贡献,并且它们自己的速度贡献应该足够高。通过这项工作,我们证明了这两种策略对于防止基于离散连续性方程的空间模型中的伪影是有效的。
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Artificial patterns in spatially discrete models of cell migration and how to mitigate them
Several discrete models for diffusive motion are known to exhibit checkerboard artifacts, absent in their continuous analogues. We study the origins of the checkerboard artifact in the discrete heat equation and show that this artifact decays exponentially in time when following either of two strategies: considering the present state of each lattice site to determine its own future state (self-contributions), or using non-square lattice geometries. Afterwards, we examine the effects of these strategies on nonlinear models of biological cell migration with two kinds of cell-cell interactions: adhesive and polar velocity alignment. In the case of adhesive interaction, we show that growing modes related to pattern formation overshadow artifacts in the long run; nonetheless, artifacts can still be completely prevented following the same strategies as in the discrete heat equation. On the other hand, for polar velocity alignment we show that artifacts are not only strengthened, but also that new artifacts can arise in this model which were not observed in the previous models. We find that the lattice geometry strategy works well to alleviate artifacts. However, the self-contribution strategy must be applied more carefully: lattice sites should contribute to both their own density and velocity values, and their own velocity contribution should be high enough. With this work, we show that these two strategies are effective for preventing artifacts in spatial models based on the discrete continuity equation.
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来源期刊
Biomath
Biomath Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
2.20
自引率
0.00%
发文量
6
审稿时长
20 weeks
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