2013-2015 年展猪中甲型流感病毒的演变及向人类的传播。

IF 2.4 2区 农林科学 Q3 INFECTIOUS DISEASES Zoonoses and Public Health Pub Date : 2023-12-18 DOI:10.1111/zph.13104
Christine M. Szablewski, Dillon S. McBride, Susan C. Trock, Gregory G. Habing, Armando E. Hoet, Sarah W. Nelson, Jacqueline M. Nolting, Andrew S. Bowman
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引用次数: 0

摘要

目的:猪是新型变异甲型流感病毒(IAV)出现的混合容器。猪源 IAV 的种间传播具有公共卫生和大流行风险。在美国,大多数人畜共患病 IAV 传播事件都与农业博览会上的猪接触有关。因此,这种人与动物之间的接触需要通过了解展览猪的种间传播机制来制定缓解策略。同样,猪 IAV 的多样性也可能成为新型变异病毒的来源,从而对猪和人类健康构成风险:为了更好地了解这些风险,我们利用 2013-2015 年期间从展览猪身上收集到的 272 株 IAV 分离物和从人类宿主身上收集到的 23 株 A(H3N2)v 病毒的全基因组序列进行了系统发育分析,从而调查了展览猪 IAV 的流行病学及其对人类的传播情况。67个展览会(24.2%)至少有一头猪的IAV检测呈阳性,总体流行率估计为8.9%(95% CI:8.3-9.6,Clopper-Pearson)。在猪身上发现的 19 种基因型中,有 5 种在人身上也被发现。某种基因型的人类病例数与该基因型在猪群中的流行率呈正相关。此外,我们还发现,A(H3N2)v 病毒与同年流行的展览猪病毒紧密聚集在一起:这些数据表明,猪系 IAV 的多种基因型都曾感染过人类,而某一年在展览猪中流行的 IAV 基因型也是在人类变异 IAV 病例中最常检测到的病毒株。对展览猪中的 IAV 进行持续监测和快速特征描述有助于及时进行表型评估,并将候选疫苗毒株与存在于人与动物交界处、最有可能传播给人类的病毒进行匹配。
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Evolution of influenza A viruses in exhibition swine and transmission to humans, 2013–2015

Aims

Swine are a mixing vessel for the emergence of novel reassortant influenza A viruses (IAV). Interspecies transmission of swine-origin IAV poses a public health and pandemic risk. In the United States, the majority of zoonotic IAV transmission events have occurred in association with swine exposure at agricultural fairs. Accordingly, this human-animal interface necessitates mitigation strategies informed by understanding of interspecies transmission mechanisms in exhibition swine. Likewise, the diversity of IAV in swine can be a source for novel reassortant or mutated viruses that pose a risk to both swine and human health.

Methods and Results

In an effort to better understand those risks, here we investigated the epidemiology of IAV in exhibition swine and subsequent transmission to humans by performing phylogenetic analyses using full genome sequences from 272 IAV isolates collected from exhibition swine and 23 A(H3N2)v viruses from human hosts during 2013–2015. Sixty-seven fairs (24.2%) had at least one pig test positive for IAV with an overall estimated prevalence of 8.9% (95% CI: 8.3–9.6, Clopper-Pearson). Of the 19 genotypes found in swine, 5 were also identified in humans. There was a positive correlation between the number of human cases of a genotype and its prevalence in exhibition swine. Additionally, we demonstrated that A(H3N2)v viruses clustered tightly with exhibition swine viruses that were prevalent in the same year.

Conclusions

These data indicate that multiple genotypes of swine-lineage IAV have infected humans, and highly prevalent IAV genotypes in exhibition swine during a given year are also the strains detected most frequently in human cases of variant IAV. Continued surveillance and rapid characterization of IAVs in exhibition swine can facilitate timely phenotypic evaluation and matching of candidate vaccine strains to those viruses present at the human-animal interface which are most likely to spillover into humans.

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来源期刊
Zoonoses and Public Health
Zoonoses and Public Health 医学-传染病学
CiteScore
5.30
自引率
4.20%
发文量
115
审稿时长
6-12 weeks
期刊介绍: Zoonoses and Public Health brings together veterinary and human health researchers and policy-makers by providing a venue for publishing integrated and global approaches to zoonoses and public health. The Editors will consider papers that focus on timely collaborative and multi-disciplinary research in zoonoses and public health. This journal provides rapid publication of original papers, reviews, and potential discussion papers embracing this collaborative spirit. Papers should advance the scientific knowledge of the sources, transmission, prevention and control of zoonoses and be authored by scientists with expertise in areas such as microbiology, virology, parasitology and epidemiology. Articles that incorporate recent data into new methods, applications, or approaches (e.g. statistical modeling) which enhance public health are strongly encouraged.
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