用于欧洲 XFEL 单粒子成像的灭活蜱传脑炎病毒样本的制备和特征描述。

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Acta Crystallographica. Section D, Structural Biology Pub Date : 2024-01-01 DOI:10.1107/S2059798323010562
Mikhail F Vorovitch, Valeriya R Samygina, Evgeny Pichkur, Peter V Konarev, Georgy Peters, Evgeny V Khvatov, Alla L Ivanova, Ksenia K Tuchynskaya, Olga I Konyushko, Anton Y Fedotov, Grigory Armeev, Konstantin V Shaytan, Mikhail V Kovalchuk, Dmitry I Osolodkin, Alexey M Egorov, Aydar A Ishmukhametov
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引用次数: 0

摘要

在欧洲 XFEL 上对病毒颗粒进行 X 射线成像,最终可以解决病毒颗粒的完整结构问题,有可能接近其他病毒学结构方法的分辨率。要利用当今的技术实现这一宏伟目标,需要大约 1 毫升纯化的病毒悬浮液,每毫升至少含有 1012 个粒子。包膜病毒从未获得过如此大量的浓缩悬浮液。蜱传脑炎病毒(TBEV)是开发包膜病毒纯化和浓缩方案的一个极具吸引力的模型系统,因为疫苗生产设施可提供大量灭活病毒材料。本文介绍了一种 TBEV 疫苗纯化和浓缩方案的开发过程,该方案结合了一种质量控制方案,可获得大量高度浓缩的非聚集悬浮液。在欧洲 XFEL 上对该样品进行了初步的单颗粒成像实验,结果显示出明显的衍射图样。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Preparation and characterization of inactivated tick-borne encephalitis virus samples for single-particle imaging at the European XFEL.

X-ray imaging of virus particles at the European XFEL could eventually allow their complete structures to be solved, potentially approaching the resolution of other structural virology methods. To achieve this ambitious goal with today's technologies, about 1 ml of purified virus suspension containing at least 1012 particles per millilitre is required. Such large amounts of concentrated suspension have never before been obtained for enveloped viruses. Tick-borne encephalitis virus (TBEV) represents an attractive model system for the development of enveloped virus purification and concentration protocols, given the availability of large amounts of inactivated virus material provided by vaccine-manufacturing facilities. Here, the development of a TBEV vaccine purification and concentration scheme is presented combined with a quality-control protocol that allows substantial amounts of highly concentrated non-aggregated suspension to be obtained. Preliminary single-particle imaging experiments were performed for this sample at the European XFEL, showing distinct diffraction patterns.

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来源期刊
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
4.50
自引率
13.60%
发文量
216
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
期刊最新文献
Reconsideration of the P-clusters in VFe proteins using the bond-valence method: towards their electron transfer and protonation. Making the most of an abundance of data. AlphaFold-guided molecular replacement for solving challenging crystal structures. Useful experimental aspects of small-wedge synchrotron crystallography for accurate structure analysis of protein molecules. Peter Main (1939-2024).
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