{"title":"通过生化弛豫振荡器控制反应模块的发生顺序","authors":"Xiaopeng Shi, Chuanhou Gao, Denis Dochain","doi":"arxiv-2401.02061","DOIUrl":null,"url":null,"abstract":"Embedding sequential computations in biochemical environments is challenging\nbecause the computations are carried out by chemical reactions, which are\ninherently disordered. In this paper we apply modular design to specific\ncalculations through chemical reactions and provide a design scheme of\nbiochemical oscillator models in order to generate periodical species for the\norder regulation of these reaction modules. We take the case of arbitrary\nmulti-module regulation into consideration, analyze the main errors in the\nregulation process under \\textit{mass-action kinetics} and demonstrate our\ndesign scheme under existing synthetic biochemical oscillator models.","PeriodicalId":501325,"journal":{"name":"arXiv - QuanBio - Molecular Networks","volume":"77 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Controlling the occurrence sequence of reaction modules through biochemical relaxation oscillators\",\"authors\":\"Xiaopeng Shi, Chuanhou Gao, Denis Dochain\",\"doi\":\"arxiv-2401.02061\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Embedding sequential computations in biochemical environments is challenging\\nbecause the computations are carried out by chemical reactions, which are\\ninherently disordered. In this paper we apply modular design to specific\\ncalculations through chemical reactions and provide a design scheme of\\nbiochemical oscillator models in order to generate periodical species for the\\norder regulation of these reaction modules. We take the case of arbitrary\\nmulti-module regulation into consideration, analyze the main errors in the\\nregulation process under \\\\textit{mass-action kinetics} and demonstrate our\\ndesign scheme under existing synthetic biochemical oscillator models.\",\"PeriodicalId\":501325,\"journal\":{\"name\":\"arXiv - QuanBio - Molecular Networks\",\"volume\":\"77 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-01-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Molecular Networks\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2401.02061\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Molecular Networks","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2401.02061","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Controlling the occurrence sequence of reaction modules through biochemical relaxation oscillators
Embedding sequential computations in biochemical environments is challenging
because the computations are carried out by chemical reactions, which are
inherently disordered. In this paper we apply modular design to specific
calculations through chemical reactions and provide a design scheme of
biochemical oscillator models in order to generate periodical species for the
order regulation of these reaction modules. We take the case of arbitrary
multi-module regulation into consideration, analyze the main errors in the
regulation process under \textit{mass-action kinetics} and demonstrate our
design scheme under existing synthetic biochemical oscillator models.