在不同温度下评估 SARS -CoV-2 野生型和相关变体中 Spike-hACE2 的相互作用

IF 1.9 3区 物理与天体物理 Q2 PHYSICS, MULTIDISCIPLINARY Frontiers in Physics Pub Date : 2023-12-14 DOI:10.3389/fphy.2023.1320437
Nabanita Mandal, Soumya Lipsa Rath
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引用次数: 0

摘要

温度对 SARS-CoV-2 的影响经常引起争论。有证据表明病毒蛋白对温度敏感;然而,热如何影响 SARS-CoV-2 蛋白与人类血管紧张素转换酶 2(ACE2)受体之间的蛋白相互作用仍有待阐明。在这里,我们通过原子模拟研究了 SARS-CoV-2 野生型和相关变体在不同温度下与人类 ACE2 受体结合的表面糖蛋白的受体结合域。我们发现,虽然在高温下蛋白质复合物的构象没有发生重大变化,但蛋白质的动态变化却显著增加。蛋白质与蛋白质之间的接触和相互作用能量都有所损失。因此,我们发现蛋白质与蛋白质之间的相互作用相当强烈。这项研究将有助于病毒蛋白质研究以及基于多肽的疫苗和疗法的设计。
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Evaluating the Spike–hACE2 interactions in the wild type and variants of concern of SARS -CoV-2 at different temperatures

The effect of temperature on SARS-CoV-2 is frequently debated upon. There is evidence of temperature sensitivity of the viral proteins; however, how heat influences the protein–protein interaction between a SARS-CoV-2 protein and the human angiotensin-converting enzyme 2 (ACE2) receptor remains to be elucidated. Here, we studied the receptor-binding domain of the surface glycoprotein of SARS-CoV-2 wild type and variants of concern bound to the human ACE2 receptor at different temperatures through atomistic simulations. We found that although there were no major conformation changes in the protein complexes at high temperatures, the dynamics of the proteins significantly increased. There was loss of protein–protein contacts and interaction energies. Thus, the protein–protein interaction was found to be rather strong. This study would be useful for viral protein studies and the design of peptide-based vaccines and therapeutics.

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来源期刊
Frontiers in Physics
Frontiers in Physics Mathematics-Mathematical Physics
CiteScore
4.50
自引率
6.50%
发文量
1215
审稿时长
12 weeks
期刊介绍: Frontiers in Physics publishes rigorously peer-reviewed research across the entire field, from experimental, to computational and theoretical physics. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics, engineers and the public worldwide.
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