Pu Zhang, Yuting Cai, Lan Ma, Jinyan Chai, Zhijun Zhou
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These barcode sequences were clustered/grouped into Operational Taxonomic Units (OTUs) using the criteria of five algorithms, namely Barcode Index Number (BIN) System, Assemble Species by Automatic Partitioning (ASAP), a Java program uses an explicit, determinate algorithm to define Molecular Operational Taxonomic Unit (jMOTU), Generalized Mixed Yule Coalescent (GMYC), and Bayesian implementation of the Poisson Tree Processes model (bPTP). The Taxon ID Tree grouped sequences of morphospecies and almost all MOTUs in distinct nonoverlapping clusters. Both long- and short-winged <i>Gampsocleis</i> species are reciprocally monophyletic in the Taxon ID Tree. In BOLD, 889 barcode sequences are assigned to 17 BINs. The algorithms ASAP, jMOTU, bPTP and GMYC clustered the barcode sequences into 6, 13, 10, and 23 MOTUs, respectively. BIN, ASAP, and bPTP algorithm placed three long-winged species, <i>G. sedakovii</i>, <i>G. sinensis</i> and <i>G. ussuriensis</i> within the same MOTU. 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引用次数: 0
摘要
DNA 条形码是对传统形态分类法的有益补充。线粒体细胞色素 c 氧化酶亚单位 I(以下简称 COI-5P)5′端的约 650 bp DNA 条形码片段被认为是鉴定 Gampsocleis 物种的实用工具。分析了来自 8 个推定 Gampsocleis 种类的 889 个标本的 DNA 条形码,其中包括 687 个新生成的 DNA 条形码。这些条形码序列按照五种算法的标准聚类/分组为操作分类单元(OTUs),这五种算法分别是条形码索引号系统(BIN)、通过自动分区组装物种(ASAP)、使用明确、确定算法定义分子操作分类单元的 Java 程序(jMOTU)、广义混合尤勒聚合(GMYC)和泊松树过程模型的贝叶斯实现(bPTP)。分类群 ID 树将形态种的序列和几乎所有的 MOTUs 分成不同的非重叠群。在分类群 ID 树中,长翅和短翅的 Gampsocleis 物种互为单系。在 BOLD 中,889 个条形码序列被分配到 17 个 BIN 中。ASAP、jMOTU、bPTP 和 GMYC 算法分别将条形码序列聚类为 6、13、10 和 23 个 MOTU。BIN、ASAP 和 bPTP 算法将三个长翅种(G. sedakovii、G. sinensis 和 G. ussuriensis)归入同一 MOTU。除 ASAP 算法外,所有物种划分算法都将两个短翅种(G. fletcheri 和 G. gratiosa)划分到至少两个 MOTU 中。未来需要进行更详细的分子和形态学综合研究,以明确这些MOTU的地位。
DNA barcoding of the genus Gampsocleis (Orthoptera, Tettigoniidae) from China
DNA barcoding is a useful addition to the traditional morphology-based taxonomy. A ca. 650 bp fragment of the 5′ end of mitochondrial cytochrome c oxidase subunit I (hereafter COI-5P) DNA barcoding was sued as a practical tool for Gampsocleis species identification. DNA barcodes from 889 specimens belonging to 8 putative Gampsocleis species was analyzed, including 687 newly generated DNA barcodes. These barcode sequences were clustered/grouped into Operational Taxonomic Units (OTUs) using the criteria of five algorithms, namely Barcode Index Number (BIN) System, Assemble Species by Automatic Partitioning (ASAP), a Java program uses an explicit, determinate algorithm to define Molecular Operational Taxonomic Unit (jMOTU), Generalized Mixed Yule Coalescent (GMYC), and Bayesian implementation of the Poisson Tree Processes model (bPTP). The Taxon ID Tree grouped sequences of morphospecies and almost all MOTUs in distinct nonoverlapping clusters. Both long- and short-winged Gampsocleis species are reciprocally monophyletic in the Taxon ID Tree. In BOLD, 889 barcode sequences are assigned to 17 BINs. The algorithms ASAP, jMOTU, bPTP and GMYC clustered the barcode sequences into 6, 13, 10, and 23 MOTUs, respectively. BIN, ASAP, and bPTP algorithm placed three long-winged species, G. sedakovii, G. sinensis and G. ussuriensis within the same MOTU. All species delimitation algorithms split two short-winged species,G. fletcheri and G. gratiosa into at least two MOTUs each, except for ASAP algorithm. More detailed molecular and morphological integrative studies are required to clarify the status of these MOTUs in the future.
期刊介绍:
Archives of Insect Biochemistry and Physiology is an international journal that publishes articles in English that are of interest to insect biochemists and physiologists. Generally these articles will be in, or related to, one of the following subject areas: Behavior, Bioinformatics, Carbohydrates, Cell Line Development, Cell Signalling, Development, Drug Discovery, Endocrinology, Enzymes, Lipids, Molecular Biology, Neurobiology, Nucleic Acids, Nutrition, Peptides, Pharmacology, Pollinators, Proteins, Toxicology. Archives will publish only original articles. Articles that are confirmatory in nature or deal with analytical methods previously described will not be accepted.