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Bombyx mori ER Chaperones Calnexin and Calreticulin Promote BmNPV Infection Through Facilitating GP64 Expression 家蚕ER伴侣钙连蛋白和钙网蛋白通过促进GP64表达促进BmNPV感染。
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-02-03 DOI: 10.1002/arch.70129
Jie Wang, Shan-shan Tao, Xue Kong, Chong-jun Ye, Jia-ping Xu, Bing Li, Ming-hui Liu

Calnexin (CNX) and calreticulin (CRT) are two essential endoplasmic reticulum chaperones involved in the folding pathway dedicated to N-glycosylated proteins. The N-glycosylated protein GP64, located in the budded virus envelope of Bombyx mori nucleopolyhedrovirus (BmNPV), plays a key role in viral entry. However, the roles of CNX and CRT in GP64 processing and maturation, as well as in BmNPV infection, remain incompletely understood. In this study, we identified the two genes BmCNX and BmCRT from a B. mori transcriptome database. Spatiotemporal expression profiles showed that BmCNX and BmCRT displayed similar patterns, with expression detected in all tissues and elevated levels in the gonad, trachea, and malpighian tubule, as well as during the egg and larval stages. Following BmNPV infection, the expression of BmCNX and BmCRT was significantly upregulated in both the midgut and BmN cells. Overexpression of BmCNX and BmCRT enhanced BmNPV proliferation and GP64 expression, while knockdown of either gene suppressed both viral proliferation and GP64 expression. Furthermore, GP64 was shown to interact with BmCNX and BmCRT, respectively. These results suggest that BmNPV infection requires both BmCNX and BmCRT to facilitate GP64 expression and promote viral proliferation. This study lays the foundation for further investigation into the roles of endoplasmic reticulum chaperones in response to BmNPV infection.

钙连蛋白(Calnexin, CNX)和钙网蛋白(calreticulin, CRT)是两种重要的内质网伴侣蛋白,参与n -糖基化蛋白的折叠途径。位于家蚕核多角体病毒(BmNPV)出芽病毒包膜中的n糖基化蛋白GP64在病毒侵入过程中起关键作用。然而,CNX和CRT在GP64的加工和成熟以及BmNPV感染中的作用仍然不完全清楚。在这项研究中,我们从家蚕转录组数据库中鉴定了两个基因BmCNX和BmCRT。时空表达谱显示,BmCNX和BmCRT表现出相似的表达模式,在所有组织中都有表达,在性腺、气管和马尔比氏小管以及卵和幼虫期表达水平升高。BmNPV感染后,BmCNX和BmCRT在中肠和BmN细胞中的表达均显著上调。BmCNX和BmCRT的过表达增强了BmNPV的增殖和GP64的表达,而敲低任何一个基因都抑制了病毒的增殖和GP64的表达。此外,GP64分别与BmCNX和BmCRT相互作用。这些结果表明,BmNPV感染需要BmCNX和BmCRT来促进GP64的表达和促进病毒增殖。本研究为进一步探讨内质网伴侣蛋白在BmNPV感染应答中的作用奠定了基础。
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引用次数: 0
Evaluation and Validation of Stable Reference Genes for Accurate Gene Expression Analysis Across Developmental Stages, Sexes, and Tissues of Helopeltis antonii (Hemiptera: Miridae) antonii Helopeltis(半翅目:Miridae)发育阶段、性别和组织间准确基因表达分析的稳定内参基因评估和验证。
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-22 DOI: 10.1002/arch.70125
Siddanna Savadi, Manju Manuel, Thippagonahally Nagaiya Raviprasad, Vanitha Kaliaperumal, Rajashekara Hosalli

Helopeltis antonii Signoret is an important sucking pest of cashew and other tree crops. Reverse transcription-quantitative PCR (RT-qPCR) is a widely used technique for analyzing gene expression. The selection of reliable reference genes is critical for accurate quantification of target gene expression using RT-qPCR. There are no studies to identify reliable reference genes or gene expression studies in H. antonii. In this study, the expression stability of eight candidate genes, RPS3A, βTubulin1, RPL13A, 18S, EF1α, Ubiquitin-conjugating enzyme E2 g (UBQ), GAPDH, and TBP, was evaluated across five different nymphal instars and different adult tissues and sexes of H. antonii. Results of stability analysis using multiple algorithms showed that the expression stability of candidate genes varied across different samples. Comprehensive stability ranking with RefFinder showed that RPL13A and TBP were the most stable in different tissues, RPS3A and UBQ were the most stable in different developmental stages, RPS3A and UBQ were the most stable in the two sexes, and UBQ and TUB were the most stable across all samples of H. antonii. Validation of identified stable reference genes (UBQ and the combination of UBQ and TUB) in normalization of two target genes (COX1 and CSP13) expression provided consistent and biologically meaningful results. This study represents the first systematic study on the identification of reliable reference genes in H. antonii and provides the basis for future molecular investigations in this important pest species.

antonii siignoret是腰果和其他乔木作物的重要吸虫。逆转录定量PCR (RT-qPCR)是一种广泛应用于基因表达分析的技术。选择可靠的内参基因是RT-qPCR准确定量靶基因表达的关键。目前尚无研究确定可靠的内参基因或对其基因表达进行研究。本研究对8个候选基因RPS3A、βTubulin1、RPL13A、18S、EF1α、UBQ、GAPDH和TBP在5个不同若虫龄期和不同成虫组织及性别中的表达稳定性进行了评价。使用多种算法进行稳定性分析的结果表明,候选基因的表达稳定性在不同的样品中存在差异。RefFinder综合稳定性排序结果显示,RPL13A和TBP在不同组织中最稳定,RPS3A和UBQ在不同发育阶段最稳定,RPS3A和UBQ在两性中最稳定,UBQ和TUB在所有样本中最稳定。鉴定出的稳定内参基因(UBQ及UBQ与TUB的组合)在两个靶基因(COX1和CSP13)表达归一化中的验证提供了一致且具有生物学意义的结果。本研究首次系统地鉴定了antonii的可靠内参基因,为今后对这一重要害虫的分子研究提供了基础。
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引用次数: 0
Combating Blue Light Pollution With Flavonoids: Implications for Environmental Health and Aging 黄酮类化合物对抗蓝光污染:对环境健康和衰老的影响。
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-09 DOI: 10.1002/arch.70122
Yuxin Yang, Xiangyu Li, Jianan He, Jie Shen

Short-wavelength blue light is commonly encountered in daily life and has been shown to be harmful to the health of organisms. This study aimed to examine the impact of blue light on aging and to explore the potential anti-aging effects of three flavonoids—luteolin, quercetin, and kaempferol—under conditions of blue light exposure. The experiment employed Drosophila melanogaster as a model organism, by feedingvarious concentrations of the three flavonoids and subsequent exposure to short-wavelength blue light. Administration of the highest concentration of the three flavonoids to D. melanogaster was associated with a reduced risk of mortality during adulthood. Male D. melanogaster receiving the highest concentration of flavonoids, as well as those receiving luteolin and quercetin individually, exhibited a reduced initial aging rate (b₀), resulting in an extended mean lifespan and a narrower lifespan distribution compared with the control group. In conclusion, this study demonstrated the effects of flavonoids on the aging process in organisms subjected to blue light. These findings provide important insights into the development of strategies to mitigate aging in the presence of blue-light-induced damage and contribute to a broader understanding of environmental influences on health and aging.

短波长的蓝光在日常生活中很常见,并已被证明对生物体的健康有害。本研究旨在研究蓝光对衰老的影响,探讨蓝光照射条件下木犀草素、槲皮素和山奈酚三种黄酮类化合物的潜在抗衰老作用。该实验以黑腹果蝇为模型生物,喂食不同浓度的三种类黄酮,然后暴露在短波长的蓝光下。最高浓度的三种黄酮类化合物施用于黑腹田鼠与成年期死亡风险降低有关。与对照组相比,黄酮浓度最高的雄性黑胃,以及单独接受木犀草素和槲皮素的雄性黑胃的初始衰老率(b 0)降低,平均寿命延长,寿命分布更窄。综上所述,本研究证明了黄酮类化合物对蓝光照射下生物体衰老过程的影响。这些发现为在存在蓝光诱导损伤的情况下制定减缓衰老的策略提供了重要见解,并有助于更广泛地了解环境对健康和衰老的影响。
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引用次数: 0
Peptides Derived From Reactive Center Loops Inhibit Digestive Trypsin-Like Enzymes in Lepidopteran Pests 活性中心环衍生的肽抑制鳞翅目害虫消化胰蛋白酶样酶。
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-09 DOI: 10.1002/arch.70123
Daniel Guimarães Silva Paulo, Julia Renata Schneider, Yaremis Meriño-Cabrera, Wesley Borges Wurlitzer, Rafael Júnior de Andrade, Ian Lucas Batista Santos, Maria Clara Neves Gomes Rodrigues, Rafael de Almeida Barros, Neilier Rodrigues da Silva Júnior, Milena Godoi Lima, Cibele Cunha Vilela, Noeli Juarez Ferla, Humberto Josué Ramos de Oliveira, Maria Goreti de Almeida Oliveira

Soybean yield is often reduced by pest attacks. Among these, Anticarsia gemmatalis Hübner (Lepidoptera: Noctuidae) stands out as one of the most important defoliating pests of soybean. Therefore, the development of new bioinsecticides targeting Lepidopteran pests is an urgent need. Protease inhibitors (PIs) have emerged as promising molecules in this context. In this study, we designed four peptides (TGPCK, TGPCR, AVIMK, and AVIMR) inspired by the reactive center loops of BPTI and SKTI to assess their potential as competitive inhibitors of trypsin-like proteases in A. gemmatalis. In silico and kinetic analyses revealed that peptide binding affinity was influenced by specific chemical interactions, with pi-sigma bonds correlating with higher affinity for AVIMK, while alkyl/pi-alkyl and C-H bonds were associated with lower affinity for AVIMR and TGPCK. Key residues (His57, Asp102, Ser195, Asp189, S195, and G197) played a crucial role in ligand binding. Enzyme inhibition assays confirmed that all peptides acted as competitive inhibitors of A. gemmatalis trypsin-glen proteases, with TGPCK displaying the highest efficacy. These findings highlight BPTI-derived peptides as potential candidates for future pest management strategies. Further studies should evaluate their effects when applied to plants, considering possible metabolic interactions and phytotoxicity.

大豆产量经常因虫害而减少。其中,豆蛾(antiarsia gemmatalis h bner,鳞翅目:夜蛾科)是大豆最重要的落叶害虫之一。因此,迫切需要开发针对鳞翅目害虫的新型生物杀虫剂。在此背景下,蛋白酶抑制剂(pi)已成为有前途的分子。在这项研究中,我们设计了四种多肽(TGPCK、TGPCR、AVIMK和AVIMR),这些多肽受到BPTI和SKTI活性中心环的启发,以评估它们作为A. gemmatalis中胰蛋白酶样蛋白酶竞争性抑制剂的潜力。硅和动力学分析表明,肽的结合亲和力受到特定化学相互作用的影响,pi-sigma键对AVIMK的亲和力较高,而烷基/pi-烷基和C-H键对AVIMR和TGPCK的亲和力较低。关键残基(His57、Asp102、Ser195、Asp189、S195和G197)在配体结合中起关键作用。酶抑制实验证实,所有多肽都是红草胰蛋白酶glen的竞争性抑制剂,其中TGPCK的抑制作用最强。这些发现突出了bpti衍生肽作为未来害虫管理策略的潜在候选者。进一步的研究应评估其应用于植物时的效果,考虑到可能的代谢相互作用和植物毒性。
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引用次数: 0
Thermal Stress-Induced Metabolic Shifts in the Parthenium Beetle: An Untargeted Metabolomics Study. 热应力诱导的Parthenium甲虫代谢变化:一项非靶向代谢组学研究。
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-01 DOI: 10.1002/arch.70126
Parinita Singh, Prema Haldhar, Tamal Das, Praval Govil, Gyaneshwer Chaubey, Munesh Kumar Gupta, Bhupendra Kumar

This study investigates the metabolomic profile of the Parthenium beetle, Zygogramma bicolorata Pallister (Coleoptera: Chrysomelidae), under thermal stress conditions. This beetle is an effective biological control agent against the invasive and toxic weed Parthenium hysterophorus. Metabolomic analysis identified 1277 metabolites, with significant variation observed among control (27°C), heat stress (35°C), and cold stress (15°C) conditions, highlighting distinct metabolic responses to temperature extremes. Heat exposure yielded the greatest number of unique metabolites, indicating elevated metabolic activity, while cold stress also induced distinct compounds, reflecting specialized adaptive responses. Enrichment analysis revealed consistent upregulation of alkaloids, lipids, and amino acid-related metabolites across all conditions, suggesting their protective roles in membrane stability, cellular signaling, and stress mitigation. Pathway analysis showed that lipid metabolism (glycerophospholipids and sphingolipids) and amino acid pathways (tryptophan, phenylalanine, and histidine) were universally affected, likely reflecting adaptive membrane remodeling and stress-response mechanisms that support beetle survival under fluctuating thermal conditions. Control beetles primarily utilized glutathione and carbohydrate metabolism, whereas heat-stressed beetles exhibited enrichment of nitrogen metabolism and amino acid catabolic pathways. In contrast, cold stress uniquely altered nucleotide metabolism and vitamin B6 pathways, suggesting distinct metabolic strategies in response to temperature extremes. Overall, these findings demonstrate that Parthenium beetles undergo extensive, condition-specific metabolic reprogramming to maintain cellular homeostasis and adapt to thermal stress.

本研究研究了在热胁迫条件下Parthenium beetle, Zygogramma bicolorata Pallister(鞘翅目:金龟科)的代谢组学特征。这种甲虫是一种有效的生物防治剂,可以有效地防治侵入性有毒杂草子宫帕特尼乌斯。代谢组学分析鉴定出1277种代谢物,在对照(27°C)、热应激(35°C)和冷应激(15°C)条件下观察到显著变化,突出了极端温度下不同的代谢反应。热暴露产生了最多数量的独特代谢物,表明代谢活性升高,而冷应激也诱导了不同的化合物,反映了特殊的适应性反应。富集分析显示,生物碱、脂质和氨基酸相关代谢物在所有条件下都有一致的上调,表明它们在膜稳定性、细胞信号传导和应激缓解方面具有保护作用。途径分析表明,脂质代谢(甘油磷脂和鞘脂)和氨基酸途径(色氨酸、苯丙氨酸和组氨酸)普遍受到影响,可能反映了适应性膜重塑和应激反应机制,这些机制支持甲虫在波动的热条件下生存。对照甲虫主要利用谷胱甘肽和碳水化合物代谢,而热应激甲虫则表现出氮代谢和氨基酸分解途径的富集。相比之下,冷应激独特地改变了核苷酸代谢和维生素B6途径,表明在极端温度下有不同的代谢策略。总的来说,这些发现表明,帕thenium甲虫经历了广泛的、特定条件的代谢重编程,以维持细胞稳态并适应热应激。
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引用次数: 0
The Species, Molecular Characteristics, and Detoxification of ABC Transporter Genes in Eriosoma lanigerum. 毛毛虫ABC转运基因的种类、分子特征及解毒作用。
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-01 DOI: 10.1002/arch.70127
Guo Yi, Fan Yinjun, Teng Ziwen, Wan Fanghao, Zhou Hongxu

The ATP-binding cassette (ABC) transporter superfamily is one of the largest groups of membrane proteins, involved in phase III of the detoxification process and plays important roles in insecticide resistance. In this study, A total of 69 ABC transporter proteins genes was identified based on genome and transcriptome, including 18 ABCA genes, 6 ABCB genes, 11 ABCC genes, 5 ABCD genes, 3 ABCF genes, and 26 ABCG genes in Eriosoma lanigerum. Among the 69 ABC transporters, 15 are classified as full transporters, while 27 are identified as half transporters. Within the ABCA and ABCG subfamilies, there are 14 and 5 proteins, respectively, that possess only the NBD domain and lack the TMD domain, indicating that these proteins do not perform transmembrane functions. Two notable ABC transporters have recently been identified in the ABC transporters of E. lanigerum. ElABCC1 features 4 NBDs and 4 TMDs, whereas ElABCG21 comprises 3 NBDs and 3 TMDs. In this study, the ElABCG2 gene was cloned, revealing that its full-length sequence is 2082 bp and that it belongs to the category of half transporters. Temporal and spatial expression analyses indicate that the expression level of this gene significantly increases during the growth of the instar stages. Furthermore, it is expressed in the head, thorax, and abdomen, with expression levels exhibiting an upward trend. The RNAi technique was employed to specifically knock out the ElABCG2 gene. Subsequently, E. lanigerum were exposed to the median lethal concentrations of imidacloprid and thiamethoxam. The results demonstrated that following the knockout of this gene, the sensitivity of E. lanigerum to imidacloprid increased significantly, while no notable change was observed in their sensitivity to thiamethoxam. This suggests that the ElABCG2 gene may play a crucial role in the detoxification process of E. lanigerum against imidacloprid. However, the specific detoxification mechanism warrants further investigation.

atp结合盒(ABC)转运蛋白超家族是最大的膜蛋白群之一,参与解毒过程的第三阶段,并在杀虫剂抗性中起重要作用。本研究通过基因组和转录组分析共鉴定出69个ABC转运蛋白基因,包括18个ABCA基因、6个ABCB基因、11个ABCC基因、5个ABCD基因、3个ABCF基因和26个ABCG基因。在69个ABC转运蛋白中,15个为全转运蛋白,27个为半转运蛋白。在ABCA和ABCG亚家族中,分别有14个和5个蛋白仅具有NBD结构域而缺乏TMD结构域,这表明这些蛋白不具有跨膜功能。最近在灯叶草的ABC转运蛋白中发现了两个显著的ABC转运蛋白。ElABCC1包含4个NBDs和4个tmd,而ElABCG21包含3个NBDs和3个tmd。本研究克隆了ElABCG2基因,发现其全长序列为2082 bp,属于半转运体范畴。时空表达分析表明,该基因的表达量在早熟期显著增加。此外,它在头部、胸部和腹部表达,表达水平呈上升趋势。采用RNAi技术特异性敲除ElABCG2基因。随后,将叶芝虫暴露于致死浓度中位数的吡虫啉和噻虫嗪。结果表明,敲除该基因后,灯叶绦虫对吡虫啉的敏感性显著增加,而对噻虫嗪的敏感性无明显变化。这表明ElABCG2基因可能在叶芝杆菌对吡虫啉的解毒过程中起关键作用。然而,具体的解毒机制有待进一步研究。
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引用次数: 0
Identification and Characterization of CAPA Receptor in Western Flower Thrips: Specific Insights Into CAPA Signaling by Naturally Occurring Peptides and CAPA-Derived Peptide Analogs 西花蓟马CAPA受体的鉴定和表征:通过天然肽和CAPA衍生肽类似物对CAPA信号传导的具体见解。
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-28 DOI: 10.1002/arch.70116
Ryssa K. Parks, Briana Price, Sujin Lee, Seunghwan Yun, Daniel Hasegawa, Seung-Joon Ahn, Man-Yeon Choi

Insect CAPA peptides belong to the family of PRXamide(a) peptides (X, variable amino acids), which are involved in essential physiological functions, including anti-diuresis, desiccation, and myotropic activity. In this study, we identified and characterized a CAPA receptor (CAPA-R) in the western flower thrips (Frankliniella occidentalis) for two endogenous CAPA peptides: CAPA1 (EVQGLFPFPRV) and CAPA2 (QGLIPFPRV). CAPA2 exhibited approximately twice the potency of CAPA1 in activating CAPA-R. Additionally, the modified, shortened peptides, GLFPFPRV and LFPFPRV—derived from CAPA1—activated the receptor more strongly than the native CAPA1. The findings from our previous study, which showed minimal expression of the mRNA responsible for CAPA1, together with the results of the present study demonstrating that the addition of two N-terminal residues, glutamate (E) and valine (V), in CAPA1 interferes with its ability to bind to the receptor, suggest that CAPA2 serves as a primary ligand for the CAPA-R. Through the binding assays using CAPA peptides derived from species across five insect orders—Thysanoptera, Hemiptera, Diptera, Lepidoptera, and Hymenoptera, as well as a non-insect species, a mollusk (slug)—we confirmed that CAPA receptors are exclusively activated by CAPA peptides from insects, regardless of species, and show no activation by other PK peptides. Additionally, we found that F. occidentalis CAPA-R utilizes both intracellular and extracellular Ca2+ ions as second messengers in signal transduction triggered by CAPA receptor activation. The short peptide analogs (6-8 residues) derived from the CAPA peptides will be interesting for the development of CAPA agonists targeting the CAPA system to control F. occidentalis populations in the field.

昆虫CAPA肽属于PRXamide(a)肽(X,可变氨基酸)家族,参与必要的生理功能,包括抗利尿,干燥和肌促活性。在本研究中,我们鉴定并鉴定了西部花蓟马(Frankliniella occidentalis)中两个内源性CAPA肽:CAPA1 (EVQGLFPFPRV)和CAPA2 (QGLIPFPRV)的CAPA受体(CAPA- r)。CAPA2在激活CAPA-R方面表现出大约两倍于CAPA1的效力。此外,修饰后的短肽,从CAPA1衍生的GLFPFPRV和lfpfprv比天然的CAPA1更能激活受体。我们之前的研究结果显示,负责CAPA1的mRNA的表达很少,加上本研究的结果表明,CAPA1中添加的两个n端残基,谷氨酸(E)和缬氨酸(V),会干扰其与受体的结合能力,这表明CAPA2是CAPA-R的初级配体。通过对来自五种昆虫目(飞蛾目、半翅目、双翅目、鳞翅目和膜翅目)以及非昆虫类软体动物(蛞蝓)的CAPA肽的结合实验,我们证实了CAPA受体只被来自昆虫的CAPA肽激活,而不被其他PK肽激活。此外,我们还发现,在CAPA受体激活引发的信号转导中,F. occidentalis CAPA- r利用细胞内和细胞外Ca2+离子作为第二信使。从CAPA多肽中提取的短肽类似物(6-8个残基)对于开发针对CAPA系统的CAPA激动剂来控制西方真菌种群将是有趣的。
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引用次数: 0
Identification of Insect Nephotettix cincticeps Proteins Interacting With Rice Dwarf Virus-Encoding Pns10 Tubule by DUALmembrane Yeast Two-Hybrid System 利用双膜酵母双杂交系统鉴定与水稻矮病毒编码Pns10小管相互作用的棉叶线虫蛋白。
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-28 DOI: 10.1002/arch.70121
Hanhong Lan, Sai Wang, Luanmei Lu

Rice dwarf virus (RDV) exploits virus-induced non-structural proteins Pns10 tubules to overcome membrane or tissue barriers for viral spread within its insect vectors, Nephotettix cincticeps. However, whether vector factors are involved in the motility of virus-containing tubules and, if so, which ones, remains largely unknown. In this study, a high-throughput DUALmembrane yeast two-hybrid system was employed to screen for N. cincticeps proteins interacting with RDV Pns10 tubule. Our results demonstrate that RDV Pns10 interacts with 64 candidate proteins from the vector, which were classified into nine molecular function categories. Furthermore, we confirmed that the expression levels of 14 selected candidate genes, primarily including three energy-related mitochondria genes, three cytoskeleton-related genes, three ribosomal protein synthesis genes, two stress-related DnaJ protein genes, and three intracellular transport-related proteins, were differently modulated upon interaction with RDV Pns10 protein. In conclusion, this study provides new insights into the role and importance of RDV Pns10 interaction with vector proteins during viral infection. It also enhances our understanding of the biochemistry and physiological responses of N. cincticeps to viral infection.

水稻矮缩病毒(RDV)利用病毒诱导的非结构蛋白Pns10小管克服膜或组织屏障,在其昆虫载体Nephotettix cinticeps中传播病毒。然而,载体因子是否参与了含病毒小管的运动,如果是的话,是哪些,在很大程度上仍然是未知的。本研究采用高通量双膜酵母双杂交系统筛选与RDV Pns10小管相互作用的N. cincticeps蛋白。我们的研究结果表明,RDV Pns10与来自载体的64个候选蛋白相互作用,这些候选蛋白被划分为9个分子功能类别。此外,我们证实了14个候选基因的表达水平,主要包括3个能量相关线粒体基因、3个细胞骨架相关基因、3个核糖体蛋白合成基因、2个应激相关DnaJ蛋白基因和3个细胞内运输相关蛋白,在与RDV Pns10蛋白相互作用时受到不同的调节。总之,本研究为RDV Pns10与载体蛋白相互作用在病毒感染中的作用和重要性提供了新的见解。这也增强了我们对棘球蚴对病毒感染的生化和生理反应的认识。
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引用次数: 0
Paradoxical Evolution of Apis mellifera Mitogenomes: Deviation From the Mutation-Selection-Drift Balance 蜜蜂有丝分裂基因组的矛盾进化:偏离突变-选择-漂移平衡
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-15 DOI: 10.1002/arch.70119
Merve Nur Aydemir

Mitochondrial genome is a powerful tool for studying evolutionary biology, because it is affected by niche adaptation, energy requirements and phenotypic plasticity of organisms. Generalizations about mitogenome evolution are tricky and lead to inconsistent results. The mitogenome can contain lesser mutations than expected and escape mutational meltdown only through the balance of mutation-selection-drift. The state of equilibrium can be achieved by not being significantly affected by any evolutionary process. The reduction of variation by selective sweeps or background selection due to selection and the results of negative purifying selection by the mechanism of genetic drafting exhibit the same effect: reduction of variation on rapidly adapting genes by positive selection and rapid removal of variation from the population due to important functional limitations. Apis mellifera represents a unique model for studying mitogenome evolution, thanks to the characters about adaptation related with life style and biochemistry related with energy requirement. The evolutionary drivers of A. mellifera mitogenomes were tested using 66 mitogenome data representing 21 subspecies. First, processes of mutations/variations were evaluated in nucleotide content and its attitudes. The genome-wide mutational processes were estimated via the abundance of rearrangements and ORF remnants. Selection forces acting on mitogenomes were tested in protein-coding genes. The direction of selection was predicted using a phylogenetic tree- based inferences, and the effects of differences on the possible 3D structures of the proteins were examined. In A. mellifera mitogenomes, the mutation-selection-drift balance was biased to deviation. The balance seems to be maintained by relaxed selection phenomenon, which affects mitogenome quite indirectly. It appears to affect the total mitogenome via copies or “remnants” of the gene, without affecting the mitogenome/mitochondrial gene at the protein level, or even without major changes in the “real” nucleotide sequences of the gene. It does this by inserting repetitive sequences into the d-loop, conserved and possibly functional gene remnants (atp8) into rRNA genes, and affecting the entire genome largely through selective sweeps. Additionally, nd3 gene was positively selected in A. mellifera mitogenomes.

线粒体基因组受生态位适应、能量需求和表型可塑性的影响,是研究进化生物学的有力工具。关于有丝分裂基因组进化的概括是棘手的,并导致不一致的结果。有丝分裂基因组可以包含比预期更少的突变,并且只有通过突变-选择-漂的平衡才能避免突变崩溃。平衡状态可以通过不受任何进化过程的显著影响而达到。由于选择而产生的选择性扫描或背景选择导致的变异减少,以及通过遗传绘图机制产生的负性净化选择的结果显示出相同的效果:通过正选择减少快速适应基因的变异,并由于重要的功能限制而迅速从群体中消除变异。蜜蜂具有与生活方式相关的适应特征和与能量需求相关的生物化学特征,为研究有丝分裂基因组进化提供了独特的模型。利用代表21个亚种的66个有丝分裂基因组数据,对蜜蜂有丝分裂基因组的进化驱动因素进行了测试。首先,突变/变异的过程在核苷酸含量及其态度进行了评估。通过重排和ORF残体的丰度来估计全基因组的突变过程。在蛋白质编码基因中测试了作用于有丝分裂基因组的选择力。使用基于系统发育树的推断预测了选择的方向,并检查了差异对蛋白质可能的3D结构的影响。在蜜蜂有丝分裂基因组中,突变-选择-漂移平衡偏向于偏差。这种平衡似乎是由宽松的选择现象维持的,而这种选择现象对有丝分裂基因组的影响是相当间接的。它似乎通过基因的拷贝或“残余物”影响总有丝分裂基因组,而不影响蛋白质水平上的有丝分裂基因组/线粒体基因,甚至不会对基因的“真实”核苷酸序列产生重大变化。它通过将重复序列插入d环,将保守的和可能具有功能的基因残体(atp8)插入rRNA基因,并通过选择性扫描在很大程度上影响整个基因组来实现这一点。此外,nd3基因在蜜蜂有丝分裂基因组中被正选择。
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引用次数: 0
Genome-Wide Analysis of the ATP-Binding Cassette (ABC) Transporter Gene Family in the Bean Flower Thrips, Megalurothrips usitatus 豆花蓟马atp结合盒(ABC)转运蛋白基因家族的全基因组分析
IF 1.9 4区 农林科学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-15 DOI: 10.1002/arch.70118
Yaning Sun, Wenzhuo Li, Chengbin Xu, Yuanye Liang, Baohui Ye, Jie Zhang, Saqib Farooq, Yongmei Fan, Jia Xie

ATP-binding cassette (ABC) transporters constitute a ubiquitous transmembrane protein family that are required for several physiological and metabolic processes in insects. While their structure and function have been discussed in Lepidopteran, Dipteran, Coleopteran, and various other insects, their role in Thysanoptera remains uncharacterized. Here, a genome-wide identification of ABC transporters in Megalurothrips usitatus (MusABCs) were performed using comparative genomics, structural validation, and phylogenetic analysis. Expression analysis and validation were conducted via transcriptomics and qRT-PCR. A total of 53 MusABCs were identified, which were classified into eight subfamilies (ABCA–ABCH), with notable clusters in ABCG (19 genes), ABCC (13 genes), and ABCH (7 genes). The expansion of MusABCC, MusABCG, and MusABCH subfamilies may suggest their critical roles in M. usitatus. Structural analysis suggested MusABCs containing motifs 3, 4, 6, 7, 8 and 10 may be associated with substrate transport and drug efflux. All MusABCs were expressed throughout the development of M. usitatus, with MusABCC3, MusABCG18, and MusABCH3 varying significantly across the stages. Furthermore, MusABCC3, MusABCH3, along with MusABCB1 and MusABCC10 exhibited distinct responses to different insecticides (spinetoram, thiamethoxam, and beta-cypermethrin). MusABCH3 exhibited the most prominent upregulation by 9.33-fold with LC10 of spinetoram and 11.32-fold with LC30 of thiamethoxam, and uniquely upregulated by beta-cypermethrin among the four genes. A total of 41 orthologous MusABCs were identified, and their potential function in the development and insecticide resistance has been discussed. This study provides a comprehensive genomic resource for MusABCs, offering potential targets for management strategies on thrips.

atp结合盒(ABC)转运蛋白构成了一个普遍存在的跨膜蛋白家族,在昆虫的一些生理和代谢过程中是必需的。虽然它们的结构和功能已经在鳞翅目、双翅目、鞘翅目和其他各种昆虫中被讨论过,但它们在囊翅目中的作用仍然不明确。本研究利用比较基因组学、结构验证和系统发育分析对美国巨尿蓟马(MusABCs)的ABC转运体进行了全基因组鉴定。通过转录组学和qRT-PCR进行表达分析和验证。共鉴定出53个MusABCs,可分为8个亚家族(ABCA-ABCH),其中ABCG(19个基因)、ABCC(13个基因)和ABCH(7个基因)具有显著的聚集性。MusABCC, MusABCG和MusABCH亚家族的扩展可能表明它们在M. usitatus中起着关键作用。结构分析表明含有3、4、6、7、8和10基序的MusABCs可能与底物运输和药物外排有关。所有的MusABCs在M. usitatus的发育过程中都有表达,其中MusABCC3、MusABCG18和MusABCH3在不同发育阶段有显著差异。此外,MusABCC3、MusABCH3以及MusABCB1和MusABCC10对不同杀虫剂(spinetoram、噻虫嗪和高效氯氰菊酯)表现出不同的反应。其中,MusABCH3基因对spinetoram LC10的上调幅度最为显著,为9.33倍,对噻虫嗪LC30的上调幅度为11.32倍,是4个基因中唯一被高效氯氰菊酯上调的基因。共鉴定出41个同源MusABCs,并对其在发育和抗药性中的潜在功能进行了探讨。本研究为MusABCs提供了全面的基因组资源,为蓟马的管理策略提供了潜在的靶点。
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引用次数: 0
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Archives of Insect Biochemistry and Physiology
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