肝细胞凋亡相关分子 CASP8 的多维分析:肝细胞癌的预后意义、免疫微环境效应和治疗意义

IF 1.4 4区 生物学 Q4 GENETICS & HEREDITY Genetics research Pub Date : 2023-12-30 DOI:10.1155/2023/2406193
Fei Peng, Fang Zhu, Baodi Cao, Liang Peng
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引用次数: 0

摘要

背景。肝细胞癌(HCC)给诊断和治疗带来了巨大挑战。了解 PANoptosis 相关分子在 HCC 中的作用对于推进治疗策略至关重要。方法。我们利用癌症基因组图谱、人类蛋白质图谱、肿瘤免疫单细胞中心和 STRING 数据库中的公开数据进行了综合分析。分析技术包括卡普兰-梅耶生存曲线、考克斯回归、LASSO 分析以及各种了解肿瘤微环境的计算方法。我们还采用了 ClueGO、基因组富集分析和其他生物富集分析算法。结果显示CASP8 是 HCC 中的重要分子,与不良生存结果相关。它主要在核质和细胞质中表达,在不同癌症类型中的表达情况各不相同。生物富集分析显示 CASP8 与关键的细胞活动和免疫反应有关。在肿瘤微环境中,CASP8 显示出与各种免疫细胞类型的相关性。为了更好地预测临床预后,研究人员绘制了一张提名图。突变分析表明,在 CASP8 表达升高的患者中,TP53 突变的频率更高。此外,研究还发现 CASP8 可调控 HCC 中的 YEATS2,这突显了肿瘤进展的潜在途径。结论我们的研究强调了 CASP8 在 HCC 中的多方面作用,强调了其预后和治疗意义。CASP8 和 YEATS2 之间的调控关系为了解 HCC 发病机制和治疗策略开辟了新途径。
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Multidimensional Analysis of PANoptosis-Related Molecule CASP8: Prognostic Significance, Immune Microenvironment Effect, and Therapeutic Implications in Hepatocellular Carcinoma
Background. Hepatocellular carcinoma (HCC) presents significant challenges in diagnosis and treatment. Understanding the role of PANoptosis-related molecules in HCC is crucial for advancing therapeutic strategies. Methods. We conducted a comprehensive analysis using public data from the Cancer Genome Atlas, Human Protein Atlas, Tumor Immune Single Cell Hub, and STRING databases. Techniques included Kaplan–Meier survival curves, Cox regression, LASSO analysis, and various computational methods for understanding the tumor microenvironment. We also employed ClueGO, gene set enrichment analysis, and other algorithms for biological enrichment analysis. Results. CASP8 emerged as a significant molecule in HCC, correlated with poor survival outcomes. Its expression was predominant in the nucleoplasm and cytosol and varied across different cancer types. Biological enrichment analysis revealed CASP8’s association with critical cellular activities and immune responses. In the tumor microenvironment, CASP8 showed correlations with various immune cell types. A nomogram plot was developed for better clinical prognostication. Mutation analysis indicated a higher frequency of TP53 mutations in patients with elevated CASP8 expression. In addition, CASP8 was found to regulate YEATS2 in HCC, highlighting a potential pathway in tumor progression. Conclusions. Our study underscores the multifaceted role of CASP8 in HCC, emphasizing its prognostic and therapeutic significance. The regulatory relationship between CASP8 and YEATS2 opens new avenues for understanding HCC pathogenesis and treatment strategies.
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来源期刊
Genetics research
Genetics research 生物-遗传学
自引率
6.70%
发文量
74
审稿时长
>12 weeks
期刊介绍: Genetics Research is a key forum for original research on all aspects of human and animal genetics, reporting key findings on genomes, genes, mutations and molecular interactions, extending out to developmental, evolutionary, and population genetics as well as ethical, legal and social aspects. Our aim is to lead to a better understanding of genetic processes in health and disease. The journal focuses on the use of new technologies, such as next generation sequencing together with bioinformatics analysis, to produce increasingly detailed views of how genes function in tissues and how these genes perform, individually or collectively, in normal development and disease aetiology. The journal publishes original work, review articles, short papers, computational studies, and novel methods and techniques in research covering humans and well-established genetic organisms. Key subject areas include medical genetics, genomics, human evolutionary and population genetics, bioinformatics, genetics of complex traits, molecular and developmental genetics, Evo-Devo, quantitative and statistical genetics, behavioural genetics and environmental genetics. The breadth and quality of research make the journal an invaluable resource for medical geneticists, molecular biologists, bioinformaticians and researchers involved in genetic basis of diseases, evolutionary and developmental studies.
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