携带 5 个质粒的新型南极海洋矛尾藻 IT1-181 的完整基因组序列

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2024-01-09 DOI:10.1016/j.margen.2024.101083
Yong-Qiang Hu , Yi-He Zhang , Wei Han , Ting Hu , Yu Du , Yin-Xin Zeng
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引用次数: 0

摘要

伽马蛋白杆菌属(Gammaproteobacteria)中的Oceanisphaera属细菌广泛分布于海洋环境中。IT1-181 从南极洲乔治王岛菲尔德斯半岛中国长城站沿海地区的潮间带沉积物中分离出来。在此,我们对菌株 IT1-181 的完整基因组进行了测序,该菌株包含一条 3,572,184 bp 的染色体(G + C 含量为 49.89 mol%)和五个质粒。共获得 3229 个蛋白质编码基因、88 个 tRNA 基因和 25 个 rRNA 基因。基因组序列分析表明,菌株 IT1-181 不仅可能是 Oceanisphaera 属的一个新物种,而且还携带有参与外氨酸和聚β-羟基丁酸(PHB)生物合成的基因。此外,在该细菌中还发现了完整的 I-E 型 CRISPR-Cas 系统的基因。这些结果表明了海洋藻类 IT1-181 菌株在生物技术方面的潜力,并有助于我们了解其在不断变化的南极潮间带环境中的生态作用。
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Complete genome sequence of the novel Antarctic Oceanisphaera sp. IT1–181 that carried five plasmids

Bacteria of the genus Oceanisphaera in the class Gammaproteobacteria are widely distributed in marine environments. Oceanisphaera sp. IT1–181 was isolated from intertidal sediment in the coastal region of the Chinese Great Wall Station on the Fildes Peninsula, King George Island, Antarctica. Here, we sequenced the complete genome of strain IT1–181, which contained a single chromosome of 3,572,184 bp (G + C content of 49.89 mol%) with five plasmids. A total of 3229 protein-coding genes, 88 tRNA genes, and 25 rRNA genes were obtained. Genome sequence analysis revealed that strain IT1–181 was not only a potentially novel species of the genus Oceanisphaera, but also harbored genes involved in biosynthesizing ectoine as well as poly-β-hydroxybutyric acid (PHB). In addition, genes of a complete type I-E CRISPR–Cas system were found in the bacterium. The results indicate the potential of strain Oceanisphaera sp. IT1–181 in biotechnology and are helpful for us understanding its ecological roles in the changing Antarctic intertidal zone environment.

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来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
期刊最新文献
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