对免疫球蛋白折叠蛋白质组进行结构和功能分析。

3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Advances in protein chemistry and structural biology Pub Date : 2024-01-01 Epub Date: 2024-01-03 DOI:10.1016/bs.apcsb.2023.11.002
Caesar Tawfeeq, James Song, Umesh Khaniya, Thomas Madej, Jiyao Wang, Philippe Youkharibache, Ravinder Abrol
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引用次数: 0

摘要

免疫球蛋白折叠(Ig fold)结构域是一种超二级结构模式,由两层 β 片状结构的夹层组成,存在于许多蛋白质中,具有多种生物功能,涵盖广泛的生理过程。该结构域呈现出一种模块化结构,由长度可变的环路连接的 β 链构成,具有高度保守的四条 β 链结构核心,两层夹心层中的 β 片延伸变化很大,这使得已知 Ig 折叠蛋白组中的进化机制既存在差异,也存在趋同。这种 Ig 折叠结构的可塑性在抗体在我们的免疫系统中成功进化的过程中发挥了核心作用,这一点已得到公认。大自然还将这种 Ig 折叠结构应用于生命的各个领域,在许多不同的生理环境中,远远超出了免疫系统的范围。在这里,我们将从结构和功能两方面概述 Ig 折叠在不同生物过程和不同细胞环境中的应用,重点介绍这一结构基团在多域蛋白质中的无数相互作用方式,以实现其功能的多样性。这包括这些功能背后可共享的特定蛋白质结构可视化,作为进一步探索横跨 Ig 折叠蛋白质组的生物分子相互作用的起点。本概述还重点介绍了如何通过自然适应、工程学甚至从零开始构建来利用这种 Ig 折叠结构,从而实现一系列生物技术应用。
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Towards a structural and functional analysis of the immunoglobulin-fold proteome.

The immunoglobulin fold (Ig fold) domain is a super-secondary structural motif consisting of a sandwich with two layers of β-sheets that is present in many proteins with very diverse biological functions covering a wide range of physiological processes. This domain presents a modular architecture built with β strands connected by variable length loops that has a highly conserved structural core of four β-strands and quite variable β-sheet extensions in the two sandwich layers that enable both divergent and convergent evolutionary mechanisms in the known Ig fold proteome. The central role of this Ig fold's structural plasticity in the evolutionary success of antibodies in our immune system is well established. Nature has also utilized this Ig fold in all domains of life in many different physiological contexts that go way beyond the immune system. Here we will present a structural and functional overview of the utilization of the Ig fold in different biological processes and in different cellular contexts to highlight some of the innumerable ways that this structural motif can interact in multidomain proteins to enable their diversity of functions. This includes shareable specific protein structure visualizations behind those functions that serve as starting points for further explorations of the biomolecular interactions spanning the Ig fold proteome. This overview also highlights how this Ig fold is being utilized through natural adaptation, engineering, and even building from scratch for a range of biotechnological applications.

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来源期刊
Advances in protein chemistry and structural biology
Advances in protein chemistry and structural biology BIOCHEMISTRY & MOLECULAR BIOLOGY-
CiteScore
7.40
自引率
0.00%
发文量
66
审稿时长
>12 weeks
期刊介绍: Published continuously since 1944, The Advances in Protein Chemistry and Structural Biology series has been the essential resource for protein chemists. Each volume brings forth new information about protocols and analysis of proteins. Each thematically organized volume is guest edited by leading experts in a broad range of protein-related topics.
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