预测肝细胞癌患者临床预后和肿瘤微环境状态的乳酸代谢相关基因特征。

IF 2 4区 医学 Q3 NUTRITION & DIETETICS Nutrition and Cancer-An International Journal Pub Date : 2024-01-01 Epub Date: 2024-02-01 DOI:10.1080/01635581.2024.2302202
Zhongcheng Zhou, Bin Wu, Jing Chen, Yiyu Shen, Jing Wang, Xujian Chen, Faming Fei, Mingyuan Zhu
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引用次数: 0

摘要

本研究旨在建立一个基于乳酸代谢相关基因(LMRGs)的预后模型,以预测肝细胞癌(HCC)患者的生存结果和肿瘤微环境状态。该模型用于计算临床样本的风险系数。我们进行了生存分析和 Cox 回归分析,以验证风险分数的独立性和可靠性,从而确定其在 HCC 预后评估中的临床意义。此外,我们还对高危和低危组的肿瘤突变负荷(TMB)、免疫细胞浸润和基因组分子功能进行了综合分析。我们获得了 134 个主要参与细胞钙稳态和钙信号通路的 LMRGs。风险评估模型中的 LMRG 包括 PFKFB4、SLC16A3、ADRA2B、SLC22A1、QRFPR 和 PROK1。该研究发现,与风险较低的患者相比,风险较高的患者的总生存期和中位生存期要短得多。这表明,在独立预测患者预后方面,风险评分具有重要的临床价值。两组患者的 TMB 也存在明显差异。最后,细胞实验表明,敲除 PFKFB4 和 SLC16A3 基因可抑制乳酸。我们的研究表明,基于 LMRGs 建立的风险评分是一种很有前景的生物标志物。
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A Lactic Acid Metabolism-Related Gene Signature for Predicting Clinical Outcome and Tumor Microenvironmental Status in Patients with Hepatocellular Carcinoma.

This study aims to build a prognostic model based on lactic acid metabolism-related genes (LMRGs) to predict survival outcomes and tumor microenvironment status of Hepatocellular carcinoma (HCC) patients. The model was used to calculate riskscores of clinical samples. Survival analysis and Cox regression analysis were conducted to verify the independence and reliability of the riskscore to determine its clinical significance in prognosis evaluation of HCC. Additionally, we conducted a comprehensive analysis of tumor mutation burden (TMB), immune cell infiltration, and gene set molecular function in the high- and low-risk groups. We obtained 134 LMRGs mainly involved in cellular calcium homeostasis and calcium signaling pathways. The LMRGs in the risk assessment model included PFKFB4, SLC16A3, ADRA2B, SLC22A1, QRFPR, and PROK1. This study discovered much shorter overall survival and median survival time of patients with higher riskscores when compared to those with lower riskscores. It was indicated that for independent prediction of patients' prognosis, the riskscore had a significant clinical value. A remarkable difference was also found regarding TMB between the two groups. Finally, cell experiments demonstrated that the knockout of PFKFB4 and SLC16A3 genes suppressed lactate. Our research demonstrated that the riskscore, established based on LMRGs, is a promising biomarker.

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来源期刊
CiteScore
5.80
自引率
3.40%
发文量
172
审稿时长
3 months
期刊介绍: This timely publication reports and reviews current findings on the effects of nutrition on the etiology, therapy, and prevention of cancer. Etiological issues include clinical and experimental research in nutrition, carcinogenesis, epidemiology, biochemistry, and molecular biology. Coverage of therapy focuses on research in clinical nutrition and oncology, dietetics, and bioengineering. Prevention approaches include public health recommendations, preventative medicine, behavior modification, education, functional foods, and agricultural and food production policies.
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