M M Wang, P W Crous, M Sandoval-Denis, S L Han, F Liu, J M Liang, W J Duan, L Cai
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A seven-locus dataset, comprising the 5.8S nuclear ribosomal RNA gene with the two flanking internal transcribed spacer (ITS) regions, the intergenic spacer region of the rDNA (IGS), partial translation elongation factor 1-alpha (<i>tef1</i>), partial calmodulin (<i>cam</i>), partial RNA polymerase largest subunit (<i>rpb1</i>), partial RNA polymerase second largest subunit (<i>rpb2</i>) gene regions, and partial β-tubulin (<i>tub2</i>), were sequenced and employed in phylogenetic analyses. A genus-level phylogenetic tree was constructed using combined <i>tef1</i>, <i>rpb1</i>, and <i>rpb2</i> sequences, which confirmed the presence of four fusarioid genera among the isolates studied. Further phylogenetic analyses of two allied genera (<i>Bisifusarium</i> and <i>Neocosmospora</i>) and nine species complexes of <i>Fusarium</i> were separately conducted employing different multi-locus datasets, to determine relationships among closely related species. Twelve novel species were identified and described in this paper. The <i>F. babinda</i> species complex is herein renamed as the <i>F. falsibabinda</i> species complex, including descriptions of new species. Sixteen species were reported as new records from China. <b>Citation</b>: Wang MM, Crous PW, Sandoval-Denis M, et al. 2022. Fusarium and allied genera from China: species diversity and distribution. 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During our investigation of fungal diversity in China, a total of 356 fusarioid isolates were obtained and identified from diverse diseased and healthy plants, or different environmental habitats, i.e., air, carbonatite, compost, faeces, soil and water, representing hitherto one of the most intensive sampling and identification efforts of fusarioid taxa in China. Combining morphology, multi-locus phylogeny and ecological preference, these isolates were identified as 72 species of <i>Fusarium</i> and allied genera, i.e., <i>Bisifusarium</i> (1), <i>Fusarium</i> (60), and <i>Neocosmospora</i> (11). A seven-locus dataset, comprising the 5.8S nuclear ribosomal RNA gene with the two flanking internal transcribed spacer (ITS) regions, the intergenic spacer region of the rDNA (IGS), partial translation elongation factor 1-alpha (<i>tef1</i>), partial calmodulin (<i>cam</i>), partial RNA polymerase largest subunit (<i>rpb1</i>), partial RNA polymerase second largest subunit (<i>rpb2</i>) gene regions, and partial β-tubulin (<i>tub2</i>), were sequenced and employed in phylogenetic analyses. A genus-level phylogenetic tree was constructed using combined <i>tef1</i>, <i>rpb1</i>, and <i>rpb2</i> sequences, which confirmed the presence of four fusarioid genera among the isolates studied. Further phylogenetic analyses of two allied genera (<i>Bisifusarium</i> and <i>Neocosmospora</i>) and nine species complexes of <i>Fusarium</i> were separately conducted employing different multi-locus datasets, to determine relationships among closely related species. Twelve novel species were identified and described in this paper. The <i>F. babinda</i> species complex is herein renamed as the <i>F. falsibabinda</i> species complex, including descriptions of new species. Sixteen species were reported as new records from China. <b>Citation</b>: Wang MM, Crous PW, Sandoval-Denis M, et al. 2022. Fusarium and allied genera from China: species diversity and distribution. 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引用次数: 0
摘要
镰刀菌属包括许多重要的植物和人类病原体,以及许多具有重要工业和商业价值的物种。在对中国真菌多样性的调查中,我们从不同的患病和健康植物或不同的环境栖息地(即空气、碳酸盐岩、堆肥、粪便、土壤和水)中获得并鉴定了 356 个镰刀菌分离物,这是迄今为止中国对镰刀菌类群最密集的取样和鉴定工作之一。结合形态学、多焦点系统发育和生态偏好,这些分离物被鉴定为 72 个镰刀菌属和相关属,即双孢镰刀菌属(1 个)、镰刀菌属(60 个)和新孢镰刀菌属(11 个)。一个七焦点数据集包括 5.8S 核核糖体 RNA 基因与两个侧翼内部转录间隔区(ITS)、rDNA 基因间间隔区(IGS)、部分翻译延伸因子 1-α(tef1)、部分钙调蛋白(cam)、部分 RNA 聚合酶最大亚基(rpb1)、部分 RNA 聚合酶第二大亚基(rpb2)基因区以及部分 β-微管蛋白(tub2)进行了测序,并用于系统发育分析。利用合并的 tef1、rpb1 和 rpb2 序列构建了一棵属一级的系统发生树,证实在所研究的分离株中存在四个镰刀菌属。利用不同的多焦点数据集分别对镰刀菌的两个同盟属(Bisifusarium 和 Neocosmospora)和九个种群进行了进一步的系统发育分析,以确定密切相关的物种之间的关系。本文确定并描述了 12 个新物种。F. babinda 物种群在本文中更名为 F. falsibabinda 物种群,包括新物种的描述。16 个种为中国的新记录。引用:Wang MM, Crous PW, Sandoval-Denis M, et al.中国的镰刀菌属及其相关属:物种多样性与分布》(Fusarium and allied genera from China: species diversity and distribution.Persoonia 48: 1-53. https://doi.org/10.3767/persoonia.2022.48.01.
Fusarium and allied genera from China: species diversity and distribution.
The genus Fusarium includes numerous important plant and human pathogens, as well as many industrially and commercially important species. During our investigation of fungal diversity in China, a total of 356 fusarioid isolates were obtained and identified from diverse diseased and healthy plants, or different environmental habitats, i.e., air, carbonatite, compost, faeces, soil and water, representing hitherto one of the most intensive sampling and identification efforts of fusarioid taxa in China. Combining morphology, multi-locus phylogeny and ecological preference, these isolates were identified as 72 species of Fusarium and allied genera, i.e., Bisifusarium (1), Fusarium (60), and Neocosmospora (11). A seven-locus dataset, comprising the 5.8S nuclear ribosomal RNA gene with the two flanking internal transcribed spacer (ITS) regions, the intergenic spacer region of the rDNA (IGS), partial translation elongation factor 1-alpha (tef1), partial calmodulin (cam), partial RNA polymerase largest subunit (rpb1), partial RNA polymerase second largest subunit (rpb2) gene regions, and partial β-tubulin (tub2), were sequenced and employed in phylogenetic analyses. A genus-level phylogenetic tree was constructed using combined tef1, rpb1, and rpb2 sequences, which confirmed the presence of four fusarioid genera among the isolates studied. Further phylogenetic analyses of two allied genera (Bisifusarium and Neocosmospora) and nine species complexes of Fusarium were separately conducted employing different multi-locus datasets, to determine relationships among closely related species. Twelve novel species were identified and described in this paper. The F. babinda species complex is herein renamed as the F. falsibabinda species complex, including descriptions of new species. Sixteen species were reported as new records from China. Citation: Wang MM, Crous PW, Sandoval-Denis M, et al. 2022. Fusarium and allied genera from China: species diversity and distribution. Persoonia 48: 1-53. https://doi.org/10.3767/persoonia.2022.48.01.
期刊介绍:
Persoonia aspires to publish papers focusing on the molecular systematics and evolution of fungi. Additionally, it seeks to advance fungal taxonomy by employing a polythetic approach to elucidate the genuine phylogeny and relationships within the kingdom Fungi. The journal is dedicated to disseminating high-quality papers that unravel both known and novel fungal taxa at the DNA level. Moreover, it endeavors to provide fresh insights into evolutionary processes and relationships. The scope of papers considered encompasses research articles, along with topical and book reviews.