{"title":"局限于圆柱表面的蠕虫链在张力作用下的缩放机制。","authors":"Greg Morrison, D. Thirumalai","doi":"10.1140/epje/s10189-023-00384-6","DOIUrl":null,"url":null,"abstract":"<div><p>We compute the free energy of confinement <span>\\(\\mathcal{{F}}\\)</span> for a wormlike chain (WLC), with persistence length <span>\\(l_p\\)</span>, that is confined to the surface of a cylinder of radius <i>R</i> under an external tension <i>f</i> using a mean field variational approach. For long chains, we analytically determine the behavior of the chain in a variety of regimes, which are demarcated by the interplay of <span>\\(l_p\\)</span>, the Odijk deflection length (<span>\\(l_d=(R^2l_p)^{1/3}\\)</span>), and the Pincus length (<span>\\(l_f = {k_BT}/{f}\\)</span>, with <span>\\(k_BT\\)</span> being the thermal energy). The theory accurately reproduces the Odijk scaling for strongly confined chains at <span>\\(f=0\\)</span>, with <span>\\(\\mathcal{{F}}\\sim Ll_p^{-1/3}R^{-2/3}\\)</span>. For moderate values of <i>f</i>, the Odijk scaling is discernible only when <span>\\({l_p}\\gg R\\)</span> for strongly confined chains. Confinement does not significantly alter the scaling of the mean extension for sufficiently high tension. The theory is used to estimate unwrapping forces for DNA from nucleosomes.</p></div>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"47 1","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2024-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Scaling regimes for wormlike chains confined to cylindrical surfaces under tension\",\"authors\":\"Greg Morrison, D. Thirumalai\",\"doi\":\"10.1140/epje/s10189-023-00384-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>We compute the free energy of confinement <span>\\\\(\\\\mathcal{{F}}\\\\)</span> for a wormlike chain (WLC), with persistence length <span>\\\\(l_p\\\\)</span>, that is confined to the surface of a cylinder of radius <i>R</i> under an external tension <i>f</i> using a mean field variational approach. For long chains, we analytically determine the behavior of the chain in a variety of regimes, which are demarcated by the interplay of <span>\\\\(l_p\\\\)</span>, the Odijk deflection length (<span>\\\\(l_d=(R^2l_p)^{1/3}\\\\)</span>), and the Pincus length (<span>\\\\(l_f = {k_BT}/{f}\\\\)</span>, with <span>\\\\(k_BT\\\\)</span> being the thermal energy). The theory accurately reproduces the Odijk scaling for strongly confined chains at <span>\\\\(f=0\\\\)</span>, with <span>\\\\(\\\\mathcal{{F}}\\\\sim Ll_p^{-1/3}R^{-2/3}\\\\)</span>. For moderate values of <i>f</i>, the Odijk scaling is discernible only when <span>\\\\({l_p}\\\\gg R\\\\)</span> for strongly confined chains. Confinement does not significantly alter the scaling of the mean extension for sufficiently high tension. The theory is used to estimate unwrapping forces for DNA from nucleosomes.</p></div>\",\"PeriodicalId\":790,\"journal\":{\"name\":\"The European Physical Journal E\",\"volume\":\"47 1\",\"pages\":\"\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2024-01-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"The European Physical Journal E\",\"FirstCategoryId\":\"4\",\"ListUrlMain\":\"https://link.springer.com/article/10.1140/epje/s10189-023-00384-6\",\"RegionNum\":4,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"The European Physical Journal E","FirstCategoryId":"4","ListUrlMain":"https://link.springer.com/article/10.1140/epje/s10189-023-00384-6","RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
摘要
我们利用均值场变分法计算了蠕虫链(WLC)的约束自由能[计算公式:见正文],蠕虫链的持续长度为[计算公式:见正文],在外部张力 f 的作用下,蠕虫链被约束在半径为 R 的圆柱体表面。对于长链,我们分析确定了链在各种状态下的行为,这些状态由[公式:见正文]、奥迪克偏转长度([公式:见正文])和平卡斯长度([公式:见正文],[公式:见正文]为热能)的相互作用来划分。该理论准确地再现了强约束链在[公式:见正文]与[公式:见正文]之间的 Odijk 缩放。对于中等值的 f,只有当强封闭链的[式:见正文]时,才能看到 Odijk 缩放。在张力足够大的情况下,密闭并不会明显改变平均延伸率的比例。该理论用于估算核糖体中 DNA 的解缠力。
Scaling regimes for wormlike chains confined to cylindrical surfaces under tension
We compute the free energy of confinement \(\mathcal{{F}}\) for a wormlike chain (WLC), with persistence length \(l_p\), that is confined to the surface of a cylinder of radius R under an external tension f using a mean field variational approach. For long chains, we analytically determine the behavior of the chain in a variety of regimes, which are demarcated by the interplay of \(l_p\), the Odijk deflection length (\(l_d=(R^2l_p)^{1/3}\)), and the Pincus length (\(l_f = {k_BT}/{f}\), with \(k_BT\) being the thermal energy). The theory accurately reproduces the Odijk scaling for strongly confined chains at \(f=0\), with \(\mathcal{{F}}\sim Ll_p^{-1/3}R^{-2/3}\). For moderate values of f, the Odijk scaling is discernible only when \({l_p}\gg R\) for strongly confined chains. Confinement does not significantly alter the scaling of the mean extension for sufficiently high tension. The theory is used to estimate unwrapping forces for DNA from nucleosomes.
期刊介绍:
EPJ E publishes papers describing advances in the understanding of physical aspects of Soft, Liquid and Living Systems.
Soft matter is a generic term for a large group of condensed, often heterogeneous systems -- often also called complex fluids -- that display a large response to weak external perturbations and that possess properties governed by slow internal dynamics.
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