Pub Date : 2026-02-09DOI: 10.1140/epje/s10189-025-00546-8
Thomas Alline, Léa Cascaro, David Pereira, Atef Asnacios
Root hairs are outgrowths of the epidermal cells of plant roots. They increase the root's exchange surface with the soil and provide it with good anchorage in the soil. Root hairs are an emblematic model of apical growth, a process also used by yeasts and hyphae to invade their environment. From a mechanical perspective, the root hair is considered as an elastic cylinder under pressure, closed by a dome that behaves like a yield fluid. We introduce here two innovative mechanical setups and protocols to characterize the mechanical properties of single growing root hairs in Arabidopsis thaliana. In the first setup, root hairs grow against an elastic obstacle until buckling. By measuring the critical buckling force, we determine the surface modulus and estimate the Young's modulus of the cell wall, which aligns with previous measurements. Using a 1D elasto-viscoplastic model of root hair growth, we assess the excess pressure beyond the yield threshold (the driver of tip growth) and estimate the axial stiffness of the root hair, reflecting its elastic resistance to compression. For the second protocol, we designed a setup where a single root hair grows against a cantilever with variable stiffness, a technique adapted from our earlier work on rigidity sensing by animal cells. This method provides an independent estimate of the root hair's axial stiffness, confirming our initial findings and suggesting that this stiffness primarily involves tip compression and depends mainly on turgor pressure, at least within the low deformation regime explored.
{"title":"Micro-mechanical approaches to characterize tip growth: Insights into root hair elasto-viscoplastic properties.","authors":"Thomas Alline, Léa Cascaro, David Pereira, Atef Asnacios","doi":"10.1140/epje/s10189-025-00546-8","DOIUrl":"https://doi.org/10.1140/epje/s10189-025-00546-8","url":null,"abstract":"<p><p>Root hairs are outgrowths of the epidermal cells of plant roots. They increase the root's exchange surface with the soil and provide it with good anchorage in the soil. Root hairs are an emblematic model of apical growth, a process also used by yeasts and hyphae to invade their environment. From a mechanical perspective, the root hair is considered as an elastic cylinder under pressure, closed by a dome that behaves like a yield fluid. We introduce here two innovative mechanical setups and protocols to characterize the mechanical properties of single growing root hairs in Arabidopsis thaliana. In the first setup, root hairs grow against an elastic obstacle until buckling. By measuring the critical buckling force, we determine the surface modulus and estimate the Young's modulus of the cell wall, which aligns with previous measurements. Using a 1D elasto-viscoplastic model of root hair growth, we assess the excess pressure beyond the yield threshold (the driver of tip growth) and estimate the axial stiffness of the root hair, reflecting its elastic resistance to compression. For the second protocol, we designed a setup where a single root hair grows against a cantilever with variable stiffness, a technique adapted from our earlier work on rigidity sensing by animal cells. This method provides an independent estimate of the root hair's axial stiffness, confirming our initial findings and suggesting that this stiffness primarily involves tip compression and depends mainly on turgor pressure, at least within the low deformation regime explored.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"49 1-2","pages":"11"},"PeriodicalIF":2.2,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146140684","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-06DOI: 10.1140/epje/s10189-026-00557-z
Mohd Salim Siddiqi, Tara Chand Kumawat
This work investigates the linear stability of a thin liquid film flowing down a uniformly heated vertical cylindrical fiber. A fourth-order nonlinear evolution equation governing the spatiotemporal dynamics of the film thickness is derived using lubrication approximation and asymptotic expansion. The model captures the influence of gravity, inertia, surface tension, thermocapillarity, and convective heat transfer through key dimensionless parameters: Bond, Reynolds, Marangoni, and Biot numbers. Temporal stability analysis reveals that, in the absence of inertia and thermocapillarity, perturbations grow due to the classical Rayleigh-Plateau instability. Moderate inertia enhances instability, although Rayleigh-Plateau instability remain dominant over inertial instability for high surface tension fluids. The relative influence of gravity and surface tension, represented by the Bond number, tends to stabilize long-wave disturbances ( ) while promoting the growth of short-wave modes ( ). Thermocapillary stress stabilizes film flow on a cooled cylinder and destabilizes it on a heated one. The Biot number plays a dual role-initially amplifying instability, then reducing it as interfacial temperature gradients diminish. Spatiotemporal analysis uncovers a transition from convective to absolute instability with increasing Marangoni or Reynolds numbers. Lower Bond numbers favor absolute instability, which transitions to convective behavior as Bond number increases. Numerical simulations align well with theoretical predictions, capturing both temporal and spatiotemporal film dynamics under varying physical conditions.
{"title":"Role of inertia in the dynamics of a thin film falling over a heated vertical cylindrical fiber.","authors":"Mohd Salim Siddiqi, Tara Chand Kumawat","doi":"10.1140/epje/s10189-026-00557-z","DOIUrl":"https://doi.org/10.1140/epje/s10189-026-00557-z","url":null,"abstract":"<p><p>This work investigates the linear stability of a thin liquid film flowing down a uniformly heated vertical cylindrical fiber. A fourth-order nonlinear evolution equation governing the spatiotemporal dynamics of the film thickness is derived using lubrication approximation and asymptotic expansion. The model captures the influence of gravity, inertia, surface tension, thermocapillarity, and convective heat transfer through key dimensionless parameters: Bond, Reynolds, Marangoni, and Biot numbers. Temporal stability analysis reveals that, in the absence of inertia and thermocapillarity, perturbations grow due to the classical Rayleigh-Plateau instability. Moderate inertia enhances instability, although Rayleigh-Plateau instability remain dominant over inertial instability for high surface tension fluids. The relative influence of gravity and surface tension, represented by the Bond number, tends to stabilize long-wave disturbances ( <math><mrow><mi>k</mi> <mo><</mo> <mn>1</mn></mrow> </math> ) while promoting the growth of short-wave modes ( <math><mrow><mi>k</mi> <mo>></mo> <mn>1</mn></mrow> </math> ). Thermocapillary stress stabilizes film flow on a cooled cylinder and destabilizes it on a heated one. The Biot number plays a dual role-initially amplifying instability, then reducing it as interfacial temperature gradients diminish. Spatiotemporal analysis uncovers a transition from convective to absolute instability with increasing Marangoni or Reynolds numbers. Lower Bond numbers favor absolute instability, which transitions to convective behavior as Bond number increases. Numerical simulations align well with theoretical predictions, capturing both temporal and spatiotemporal film dynamics under varying physical conditions.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"49 1-2","pages":"10"},"PeriodicalIF":2.2,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146130845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-06DOI: 10.1140/epje/s10189-025-00548-6
Yoshiharu Suzuki, Kaito Sasaki
Dielectric spectroscopy measurements of bulk and emulsified high-density amorphous ices (HDA) at 1.0 GPa were carried out to examine the effect of emulsion matrix on the dielectric spectra. The presence of emulsion matrix induces the shifts of the loss peak to higher frequency side. The degree of shift depends on the volume fraction of the emulsion matrix to HDA. This indicates that the relaxation time obtained from the dielectric spectra of emulsified HDA is underestimated than the true relaxation time of HDA. The results suggest that the emulsified sample is not appropriate for dielectric spectroscopy measurement in water polyamorphism study, although the emulsification is effective, for example, in avoiding water crystallization.
{"title":"Dielectric spectroscopy of emulsified high-density amorphous ice: the emulsion effect on the dielectric spectrum.","authors":"Yoshiharu Suzuki, Kaito Sasaki","doi":"10.1140/epje/s10189-025-00548-6","DOIUrl":"https://doi.org/10.1140/epje/s10189-025-00548-6","url":null,"abstract":"<p><p>Dielectric spectroscopy measurements of bulk and emulsified high-density amorphous ices (HDA) at 1.0 GPa were carried out to examine the effect of emulsion matrix on the dielectric spectra. The presence of emulsion matrix induces the shifts of the loss peak to higher frequency side. The degree of shift depends on the volume fraction of the emulsion matrix to HDA. This indicates that the relaxation time obtained from the dielectric spectra of emulsified HDA is underestimated than the true relaxation time of HDA. The results suggest that the emulsified sample is not appropriate for dielectric spectroscopy measurement in water polyamorphism study, although the emulsification is effective, for example, in avoiding water crystallization.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"49 1-2","pages":"9"},"PeriodicalIF":2.2,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146130892","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chemical graph theory provides a mathematical framework for representing molecular structures as graphs, where atoms correspond to vertices and chemical bonds to edges. This approach enables the use of molecular descriptors to extract reliable structural information and model physicochemical properties. In this study, we investigate the use of recently introduced degree-based molecular descriptors including Euler Sombor, elliptic Sombor, reverse Sombor, reverse elliptic Sombor, reverse Euler Sombor, Lanzhou, and ad-hoc Lanzhou indices to model key properties of polychlorinated biphenyls (PCBs). Experimentally reported properties such as melting point, relative retention time, octanol-water partition coefficient, enthalpy of formation, and Henry’s law constant were analyzed. Quantitative structure–property relationship models were developed using linear, polynomial, and ridge regression techniques. The predictive performance of these models was evaluated through comparison of actual and predicted values, cross-validation, and bootstrapping. Results indicate that the selected descriptors, particularly the elliptic Sombor and reverse Euler Sombor indices, exhibit strong correlations with PCB properties, demonstrating their utility in predicting physicochemical behavior. These models hold potential for applications in chemical ecology, environmental risk assessment, and computational molecular design.
{"title":"QSPR modeling of polychlorinated biphenyls using degree-based molecular descriptors: a comparative study with linear, polynomial, and ridge regression","authors":"Huang Wei, Sadia Noureen, Amna Maryam, Fairouz Tchier, Adnan Aslam","doi":"10.1140/epje/s10189-025-00551-x","DOIUrl":"10.1140/epje/s10189-025-00551-x","url":null,"abstract":"<p>Chemical graph theory provides a mathematical framework for representing molecular structures as graphs, where atoms correspond to vertices and chemical bonds to edges. This approach enables the use of molecular descriptors to extract reliable structural information and model physicochemical properties. In this study, we investigate the use of recently introduced degree-based molecular descriptors including Euler Sombor, elliptic Sombor, reverse Sombor, reverse elliptic Sombor, reverse Euler Sombor, Lanzhou, and ad-hoc Lanzhou indices to model key properties of polychlorinated biphenyls (PCBs). Experimentally reported properties such as melting point, relative retention time, octanol-water partition coefficient, enthalpy of formation, and Henry’s law constant were analyzed. Quantitative structure–property relationship models were developed using linear, polynomial, and ridge regression techniques. The predictive performance of these models was evaluated through comparison of actual and predicted values, cross-validation, and bootstrapping. Results indicate that the selected descriptors, particularly the elliptic Sombor and reverse Euler Sombor indices, exhibit strong correlations with PCB properties, demonstrating their utility in predicting physicochemical behavior. These models hold potential for applications in chemical ecology, environmental risk assessment, and computational molecular design.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"49 1-2","pages":""},"PeriodicalIF":2.2,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146082516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-28DOI: 10.1140/epje/s10189-025-00553-9
Andrés Solís-Cuevas, Pablo Vázquez-Montejo
We examine the reaction of a homogeneous spherical fluid vesicle to the force exerted by a rigid circular ring located at its equator in the linear regime. We solve analytically the linearized first integral of the Euler–Lagrange equation subject to the global constraints of fixed area and volume, as well as to the local constraint imposed by the ring. We determine the first-order perturbations to the generating curve of the spherical membrane, which are characterized by the difference of the radii of the membrane and the ring, and by a parameter depending on the physical quantities of the membrane. We determine the total force that is required to begin the deformation of the membrane, which gives rise to a discontinuity in the curvature of the membrane across the ring.
{"title":"Small equatorial deformation of homogeneous spherical fluid vesicles","authors":"Andrés Solís-Cuevas, Pablo Vázquez-Montejo","doi":"10.1140/epje/s10189-025-00553-9","DOIUrl":"10.1140/epje/s10189-025-00553-9","url":null,"abstract":"<p>We examine the reaction of a homogeneous spherical fluid vesicle to the force exerted by a rigid circular ring located at its equator in the linear regime. We solve analytically the linearized first integral of the Euler–Lagrange equation subject to the global constraints of fixed area and volume, as well as to the local constraint imposed by the ring. We determine the first-order perturbations to the generating curve of the spherical membrane, which are characterized by the difference of the radii of the membrane and the ring, and by a parameter depending on the physical quantities of the membrane. We determine the total force that is required to begin the deformation of the membrane, which gives rise to a discontinuity in the curvature of the membrane across the ring.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"49 1-2","pages":""},"PeriodicalIF":2.2,"publicationDate":"2026-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146058521","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-21DOI: 10.1140/epje/s10189-025-00543-x
Riddhika Mahalanabis, Balakrishnan Ashok
We study water uptake in plants by modelling the xylem as a narrow capillary tube through which sap rises under transpiration pull. We modify the classical Bosanquet equation, incorporating the effect of friction f, arising from xylem wall protrusions, while including corrections to the surface tension due to the presence of ions in the sap and due to local curvature via the Tolman correction. We also take into consideration an externally imposed transpiration flux. We identify a dimensionless tuning parameter, (xi ), that is a relative measure of capillary to hydrostatic forces that, along with f, affects system behaviour. In the absence of transpiration, transitions between oscillatory and non-oscillatory behavior of the sap column depends on (xi ), while its rate of rise depends on f. We find that the addition of transpiration to the xylem capillary system, by considering diffusion and evaporation at the leaves, causes the system to instead stabilize around a nonlinear center, also crucially increasing the maximal height to which the water rises. We obtain scaling power-laws for the time required for the sap to reach to reach its maximum height, and the characteristic time scale for oscillations in the column to decay to its fixed point, as functions, respectively, of f and of (xi ). We investigate the competitive effects of transpiration pull and presence of corrugation in the conduits. Our approach integrates capillary flow physics with dynamical systems theory to uncover new insights and get a more comprehensive and novel understanding of the problem of water transport in plants.
Modelling sap rise in xylem as flow through a corrugated capillary, including the effects of charged ions and corrugation friction, as well as transpiration from the leaves.
{"title":"Effect of conduit friction and presence of charged species on rise of xylem sap","authors":"Riddhika Mahalanabis, Balakrishnan Ashok","doi":"10.1140/epje/s10189-025-00543-x","DOIUrl":"10.1140/epje/s10189-025-00543-x","url":null,"abstract":"<p>We study water uptake in plants by modelling the xylem as a narrow capillary tube through which sap rises under transpiration pull. We modify the classical Bosanquet equation, incorporating the effect of friction <i>f</i>, arising from xylem wall protrusions, while including corrections to the surface tension due to the presence of ions in the sap and due to local curvature via the Tolman correction. We also take into consideration an externally imposed transpiration flux. We identify a dimensionless tuning parameter, <span>(xi )</span>, that is a relative measure of capillary to hydrostatic forces that, along with <i>f</i>, affects system behaviour. In the absence of transpiration, transitions between oscillatory and non-oscillatory behavior of the sap column depends on <span>(xi )</span>, while its rate of rise depends on <i>f</i>. We find that the addition of transpiration to the xylem capillary system, by considering diffusion and evaporation at the leaves, causes the system to instead stabilize around a nonlinear center, also crucially increasing the maximal height to which the water rises. We obtain scaling power-laws for the time required for the sap to reach to reach its maximum height, and the characteristic time scale for oscillations in the column to decay to its fixed point, as functions, respectively, of <i>f</i> and of <span>(xi )</span>. We investigate the competitive effects of transpiration pull and presence of corrugation in the conduits. Our approach integrates capillary flow physics with dynamical systems theory to uncover new insights and get a more comprehensive and novel understanding of the problem of water transport in plants.</p><p>Modelling sap rise in xylem as flow through a corrugated capillary, including the effects of charged ions and corrugation friction, as well as transpiration from the leaves.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"49 1-2","pages":""},"PeriodicalIF":2.2,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146008519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-21DOI: 10.1140/epje/s10189-025-00552-w
Deni Aryati, Asmida Herawati, Kamila Munna, Sri Jumini, Sunaryo, Iman Santoso
Organic semiconductor materials from natural extracts have attracted significant attention due to their sustainability and tunable optoelectronic properties. This study explores photophysical properties of Carica pubescens fruit and leaf extracts to evaluate their potential as organic semiconductor materials. UV–Vis absorption analysis shows that the fruit extract, with a dominant peak at 263 nm attributed to π–π* transitions of anthocyanins and flavonoids, possesses a wide optical band gap of approximately 3.58 eV, suggesting limited semiconducting relevance. In contrast, the leaf extract displays multiple absorption bands in the visible region (424, 464, 615, and 663 nm), corresponding to chlorophyll a, chlorophyll b, and carotenoids. The optical band gap of the leaf extract, determined to be about 1.82 eV, falls within the ideal range for organic optoelectronic devices. Photoluminescence (PL) and time-resolved photoluminescence (TRPL) analyses uncover two distinct emission peaks at approximately 675 nm and 728 nm. Photophysical responses were evaluated over a concentration range of 50 to 500 ppm. At an optimal concentration of 250 ppm, the leaf extract exhibits maximum PL intensity, extended exciton lifetimes, and behaviors consistent with a partial reduction of non-radiative recombination channels. Increasing the concentration beyond this point leads to significant quenching effects and shorter lifetimes. This behavior is primarily governed by a static quenching mechanism, resulting from reduced intermolecular distances and enhanced molecular aggregation, which facilitate exciton–exciton annihilation. Overall, the Carica pubescens leaf extract demonstrates tunable and optimum photophysical behavior at 250 ppm, indicating that it is a promising bio-derived organic semiconductor candidate from an optical standpoint for sustainable photovoltaics, biosensing, and flexible optoelectronics, pending future confirmation of its charge-transport properties in solid-state devices.