从分析角度看复方苦参注射液治疗急性髓性白血病的机制

Jia Zeng, Huiqun Tian, Le Kang, Qian Wu, Shiwen Liu, Yugang Xiao, Hongwei Shao, Guangrui Huang, Song Liu
{"title":"从分析角度看复方苦参注射液治疗急性髓性白血病的机制","authors":"Jia Zeng, Huiqun Tian, Le Kang, Qian Wu, Shiwen Liu, Yugang Xiao, Hongwei Shao, Guangrui Huang, Song Liu","doi":"10.2174/0115733947271076231204181500","DOIUrl":null,"url":null,"abstract":"\n\nChemotherapy resistance often occurs in the conventional treatment with\nAML and results in poor cure rates. CKI was found to have a good therapeutic effect when it was\ncombined with other chemotherapy drugs in the clinical treatment of AML. However, the underlying\nmechanism is unclear. Therefore, this study aims to preliminarily describe the pharmacological activity\nand mechanism of CKI through comprehensive network pharmacology methods.\n\n\n\nThis study aimed to explore the possible mechanism of Compound Kushen Injection\n(CKI) in the treatment of acute myeloid leukemia (AML) by using network pharmacology, molecular\ndocking, and molecular dynamics techniques.\n\n\n\nActive compounds of CKI were identified based on the Traditional Chinese Medicine Systems\nPharmacy (TCMSP) database, and the related targets of the active compounds were predicted using\nSwiss Target Prediction; AML-related targets from Gene Cards and Online Mendelian Inheritance in\nMan (OMIM) were collected. Protein-protein interaction (PPI) network was constructed, and its mechanism\nwas predicted through Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes\n(KEGG) enrichment. The protein-protein interaction (PPI) network construction, module partitioning,\nand hub node screening were visualized by using the Cytoscape software and its plugins. These\nmodule partitionings were also verified by using molecular docking and molecular dynamics.\n\n\n\nFifty-six active ingredients corresponding to 223 potential targets were identified. Biological\nfunction analysis showed that 731, 70, and 137 GO entries were associated with biological processes,\ncellular components, and molecular functions, respectively. A total of 163 KEGG pathways were\nidentified. Network analysis showed that the key anti-AML targets of CKI are MAPK3, EGFR, SRC,\nPIK3CA, and PIK3R1 targets, which are involved in the PI3K/Akt and Ras/MAPK signaling pathways\nor related crosstalk pathways.\n\n\n\nOur results suggested that the key anti-AML targets of CKI, such as MAPK3, EGFR,\nSRC, PIK3CA and PIK3R1, are involved in the PI3K/Akt and Ras/MAPK signaling pathways or related\ncrosstalk pathways. Concentrating on the dynamic and complex crosstalk regulation between\nPI3K/Akt and Ras/MAPK signal pathways and related signal pathways may be a new direction in\nanti-AML therapy in the future.\n","PeriodicalId":503819,"journal":{"name":"Current Cancer Therapy Reviews","volume":"62 8","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Mechanism of Compound Kushen Injection in the Treatment of Acute Myeloid Leukemia from the Analysis Perspectives\",\"authors\":\"Jia Zeng, Huiqun Tian, Le Kang, Qian Wu, Shiwen Liu, Yugang Xiao, Hongwei Shao, Guangrui Huang, Song Liu\",\"doi\":\"10.2174/0115733947271076231204181500\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n\\nChemotherapy resistance often occurs in the conventional treatment with\\nAML and results in poor cure rates. CKI was found to have a good therapeutic effect when it was\\ncombined with other chemotherapy drugs in the clinical treatment of AML. However, the underlying\\nmechanism is unclear. Therefore, this study aims to preliminarily describe the pharmacological activity\\nand mechanism of CKI through comprehensive network pharmacology methods.\\n\\n\\n\\nThis study aimed to explore the possible mechanism of Compound Kushen Injection\\n(CKI) in the treatment of acute myeloid leukemia (AML) by using network pharmacology, molecular\\ndocking, and molecular dynamics techniques.\\n\\n\\n\\nActive compounds of CKI were identified based on the Traditional Chinese Medicine Systems\\nPharmacy (TCMSP) database, and the related targets of the active compounds were predicted using\\nSwiss Target Prediction; AML-related targets from Gene Cards and Online Mendelian Inheritance in\\nMan (OMIM) were collected. Protein-protein interaction (PPI) network was constructed, and its mechanism\\nwas predicted through Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes\\n(KEGG) enrichment. The protein-protein interaction (PPI) network construction, module partitioning,\\nand hub node screening were visualized by using the Cytoscape software and its plugins. These\\nmodule partitionings were also verified by using molecular docking and molecular dynamics.\\n\\n\\n\\nFifty-six active ingredients corresponding to 223 potential targets were identified. Biological\\nfunction analysis showed that 731, 70, and 137 GO entries were associated with biological processes,\\ncellular components, and molecular functions, respectively. A total of 163 KEGG pathways were\\nidentified. Network analysis showed that the key anti-AML targets of CKI are MAPK3, EGFR, SRC,\\nPIK3CA, and PIK3R1 targets, which are involved in the PI3K/Akt and Ras/MAPK signaling pathways\\nor related crosstalk pathways.\\n\\n\\n\\nOur results suggested that the key anti-AML targets of CKI, such as MAPK3, EGFR,\\nSRC, PIK3CA and PIK3R1, are involved in the PI3K/Akt and Ras/MAPK signaling pathways or related\\ncrosstalk pathways. Concentrating on the dynamic and complex crosstalk regulation between\\nPI3K/Akt and Ras/MAPK signal pathways and related signal pathways may be a new direction in\\nanti-AML therapy in the future.\\n\",\"PeriodicalId\":503819,\"journal\":{\"name\":\"Current Cancer Therapy Reviews\",\"volume\":\"62 8\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-01-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Current Cancer Therapy Reviews\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2174/0115733947271076231204181500\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Current Cancer Therapy Reviews","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2174/0115733947271076231204181500","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

在传统的急性髓细胞白血病治疗中,经常会出现化疗耐药性,导致治愈率低下。在急性髓细胞性白血病的临床治疗中,发现 CKI 与其他化疗药物联合使用具有良好的治疗效果。然而,其潜在机制尚不清楚。本研究旨在利用网络药理学、分子定位和分子动力学技术,探讨复方苦参注射液(CKI)治疗急性髓性白血病(AML)的可能机制。根据中药系统药物数据库(TCMSP)鉴定了复方木香注射液的活性化合物,并利用瑞士靶点预测法预测了活性化合物的相关靶点;收集了基因卡片和在线人类孟德尔遗传(OMIM)中与急性髓系白血病相关的靶点。构建了蛋白-蛋白相互作用(PPI)网络,并通过基因本体(GO)分析和京都基因组百科全书(KEGG)富集预测了其机制。利用Cytoscape软件及其插件对蛋白质-蛋白质相互作用(PPI)网络的构建、模块划分和枢纽节点筛选进行了可视化处理。通过分子对接和分子动力学验证了这些模块划分。生物功能分析显示,分别有 731、70 和 137 个 GO 条目与生物过程、细胞成分和分子功能相关。共鉴定出 163 条 KEGG 通路。网络分析显示,CKI的关键抗AML靶点是MAPK3、表皮生长因子受体、SRC、PIK3CA和PIK3R1靶点,这些靶点参与了PI3K/Akt和Ras/MAPK信号通路或相关串扰通路。关注PI3K/Akt和Ras/MAPK信号通路及相关信号通路之间动态而复杂的串扰调控可能是未来抗AML治疗的一个新方向。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Mechanism of Compound Kushen Injection in the Treatment of Acute Myeloid Leukemia from the Analysis Perspectives
Chemotherapy resistance often occurs in the conventional treatment with AML and results in poor cure rates. CKI was found to have a good therapeutic effect when it was combined with other chemotherapy drugs in the clinical treatment of AML. However, the underlying mechanism is unclear. Therefore, this study aims to preliminarily describe the pharmacological activity and mechanism of CKI through comprehensive network pharmacology methods. This study aimed to explore the possible mechanism of Compound Kushen Injection (CKI) in the treatment of acute myeloid leukemia (AML) by using network pharmacology, molecular docking, and molecular dynamics techniques. Active compounds of CKI were identified based on the Traditional Chinese Medicine Systems Pharmacy (TCMSP) database, and the related targets of the active compounds were predicted using Swiss Target Prediction; AML-related targets from Gene Cards and Online Mendelian Inheritance in Man (OMIM) were collected. Protein-protein interaction (PPI) network was constructed, and its mechanism was predicted through Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment. The protein-protein interaction (PPI) network construction, module partitioning, and hub node screening were visualized by using the Cytoscape software and its plugins. These module partitionings were also verified by using molecular docking and molecular dynamics. Fifty-six active ingredients corresponding to 223 potential targets were identified. Biological function analysis showed that 731, 70, and 137 GO entries were associated with biological processes, cellular components, and molecular functions, respectively. A total of 163 KEGG pathways were identified. Network analysis showed that the key anti-AML targets of CKI are MAPK3, EGFR, SRC, PIK3CA, and PIK3R1 targets, which are involved in the PI3K/Akt and Ras/MAPK signaling pathways or related crosstalk pathways. Our results suggested that the key anti-AML targets of CKI, such as MAPK3, EGFR, SRC, PIK3CA and PIK3R1, are involved in the PI3K/Akt and Ras/MAPK signaling pathways or related crosstalk pathways. Concentrating on the dynamic and complex crosstalk regulation between PI3K/Akt and Ras/MAPK signal pathways and related signal pathways may be a new direction in anti-AML therapy in the future.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Revolutionizing Oral Cancer Treatment: Immunotherapeutic Approaches Breast Cancer Diagnosis Using Computational Model: Recent Advancement Clinical Efficacy and Mechanism of Action of Recently FDA Approved Anticancer Drugs: An Updated Review Prevalence of Cervical Cancer and Premalignant Cases Based on Pap Smear Screening in Iran in 2022 Precision Genome Editing: The Synergy of CRISPR and Nanotechnology in Cancer Treatment
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1