Mei-Lan Chu, Xing-Yue M Ge, Jeffrey Eastham, Trung Nguyen, Reina N Fuji, Ruth Sullivan, Daniel Ruderman
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引用次数: 0
摘要
毒理病理学的数字病理工作流程依赖于组织病理学切片的整张切片图像(WSI)。不同型号和不同制造商生产的 WSI 扫描仪对色彩的还原不一致,会导致 WSI 的色彩表现和扫描仪之间的色彩差异不同。虽然病理学家在评估 WSI 时可以适应一定范围的颜色变化,但颜色变化会降低数字病理学计算应用的性能。特别是,颜色变化会影响人工智能应用对来自不同来源的大量数据的泛化。为了应对这些挑战,我们开发了一套流程,其中包括两个模块:(1) 评估扫描仪的色彩再现性以及它们之间的色彩差异;(2) 对 WSI 进行色彩校正,以尽量减少色彩偏差和差异。我们的流程可确保不同 WSI 扫描仪的色彩再现一致,并增强 WSI 的色彩均匀性,而且其灵活性使其易于整合,成为不同型号和不同制造商的 WSI 扫描仪扫描后的一个后处理步骤。
Assessment of Color Reproducibility and Mitigation of Color Variation in Whole Slide Image Scanners for Toxicologic Pathology.
Digital pathology workflows in toxicologic pathology rely on whole slide images (WSIs) from histopathology slides. Inconsistent color reproduction by WSI scanners of different models and from different manufacturers can result in different color representations and inter-scanner color variation in the WSIs. Although pathologists can accommodate a range of color variation during their evaluation of WSIs, color variability can degrade the performance of computational applications in digital pathology. In particular, color variability can compromise the generalization of artificial intelligence applications to large volumes of data from diverse sources. To address these challenges, we developed a process that includes two modules: (1) assessing the color reproducibility of our scanners and the color variation among them and (2) applying color correction to WSIs to minimize the color deviation and variation. Our process ensures consistent color reproduction across WSI scanners and enhances color homogeneity in WSIs, and its flexibility enables easy integration as a post-processing step following scanning by WSI scanners of different models and from different manufacturers.
期刊介绍:
Toxicologic Pathology is dedicated to the promotion of human, animal, and environmental health through the dissemination of knowledge, techniques, and guidelines to enhance the understanding and practice of toxicologic pathology. Toxicologic Pathology, the official journal of the Society of Toxicologic Pathology, will publish Original Research Articles, Symposium Articles, Review Articles, Meeting Reports, New Techniques, and Position Papers that are relevant to toxicologic pathology.