通过计算设计一种截短的爪哇喷吐眼镜蛇(Naja sputatrix)毒液心脏毒素类似物,将其作为一种前景看好的促胰岛素分泌剂

Ichda Arini Dinana, Widodo Widodo, Nia Kurniawan
{"title":"通过计算设计一种截短的爪哇喷吐眼镜蛇(Naja sputatrix)毒液心脏毒素类似物,将其作为一种前景看好的促胰岛素分泌剂","authors":"Ichda Arini Dinana, Widodo Widodo, Nia Kurniawan","doi":"10.21776/ub.biotropika.2023.011.03.03","DOIUrl":null,"url":null,"abstract":"Treatment options for diabetes may vary widely, however, around 50% of all diabetic patients do not reach the minimum glycemic target. Therefore, drugs that are able to lower glucose levels through unconventional targets are still needed for the treatment of type 2 diabetes. This study aimed to investigate the activity of cardiotoxins from N. sputatrix towards Kv channels as potential targets for glucose level reduction. Molecular docking analysis was conducted using the ClusPro web server, and the resulting protein-ligand interactions were visualized using BioVia Discovery Studio and LigPlus v.4.5.3. The stability of the docking structures was further examined through molecular dynamics simulations. The CTX-1, CTX-3, CTX-4, CTX-5, and CTX-KJC3 sequences from N. sputatrix were aligned and modeled, focusing on the 62-81 amino acid residues. The models of CTX-3, CTX-4, and CTX-5 demonstrated interactions with the binding site of the KcsA receptor. Additionally, substituting the Val74 residue in the CTX62-81 fragment with Lys74 resulted in reduced binding energy and mitigated the cytotoxic effects of CTX, while maintaining its insulinotropic activity","PeriodicalId":9004,"journal":{"name":"Biotropika: Journal of Tropical Biology","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Computational Design of a Truncated Javan Spitting Cobra (Naja sputatrix) Venom Cardiotoxin Analogue as a Promising Insulinotropic Agent\",\"authors\":\"Ichda Arini Dinana, Widodo Widodo, Nia Kurniawan\",\"doi\":\"10.21776/ub.biotropika.2023.011.03.03\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Treatment options for diabetes may vary widely, however, around 50% of all diabetic patients do not reach the minimum glycemic target. Therefore, drugs that are able to lower glucose levels through unconventional targets are still needed for the treatment of type 2 diabetes. This study aimed to investigate the activity of cardiotoxins from N. sputatrix towards Kv channels as potential targets for glucose level reduction. Molecular docking analysis was conducted using the ClusPro web server, and the resulting protein-ligand interactions were visualized using BioVia Discovery Studio and LigPlus v.4.5.3. The stability of the docking structures was further examined through molecular dynamics simulations. The CTX-1, CTX-3, CTX-4, CTX-5, and CTX-KJC3 sequences from N. sputatrix were aligned and modeled, focusing on the 62-81 amino acid residues. The models of CTX-3, CTX-4, and CTX-5 demonstrated interactions with the binding site of the KcsA receptor. Additionally, substituting the Val74 residue in the CTX62-81 fragment with Lys74 resulted in reduced binding energy and mitigated the cytotoxic effects of CTX, while maintaining its insulinotropic activity\",\"PeriodicalId\":9004,\"journal\":{\"name\":\"Biotropika: Journal of Tropical Biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-01-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biotropika: Journal of Tropical Biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.21776/ub.biotropika.2023.011.03.03\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biotropika: Journal of Tropical Biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.21776/ub.biotropika.2023.011.03.03","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

糖尿病的治疗方案可能千差万别,但约有 50%的糖尿病患者达不到最低血糖目标。因此,治疗 2 型糖尿病仍然需要能够通过非常规靶点降低血糖水平的药物。本研究旨在研究 N. sputatrix 的心脏毒素对 Kv 通道的活性,Kv 通道是降低血糖水平的潜在靶点。使用 ClusPro 网络服务器进行了分子对接分析,并使用 BioVia Discovery Studio 和 LigPlus v.4.5.3 可视化了由此产生的蛋白质配体相互作用。通过分子动力学模拟进一步检验了对接结构的稳定性。对来自 N. sputatrix 的 CTX-1、CTX-3、CTX-4、CTX-5 和 CTX-KJC3 序列进行了对齐和建模,重点研究了 62-81 个氨基酸残基。CTX-3、CTX-4 和 CTX-5 的模型显示了与 KcsA 受体结合位点的相互作用。此外,用 Lys74 取代 CTX62-81 片段中的 Val74 残基可降低结合能,减轻 CTX 的细胞毒性作用,同时保持其促胰岛素活性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Computational Design of a Truncated Javan Spitting Cobra (Naja sputatrix) Venom Cardiotoxin Analogue as a Promising Insulinotropic Agent
Treatment options for diabetes may vary widely, however, around 50% of all diabetic patients do not reach the minimum glycemic target. Therefore, drugs that are able to lower glucose levels through unconventional targets are still needed for the treatment of type 2 diabetes. This study aimed to investigate the activity of cardiotoxins from N. sputatrix towards Kv channels as potential targets for glucose level reduction. Molecular docking analysis was conducted using the ClusPro web server, and the resulting protein-ligand interactions were visualized using BioVia Discovery Studio and LigPlus v.4.5.3. The stability of the docking structures was further examined through molecular dynamics simulations. The CTX-1, CTX-3, CTX-4, CTX-5, and CTX-KJC3 sequences from N. sputatrix were aligned and modeled, focusing on the 62-81 amino acid residues. The models of CTX-3, CTX-4, and CTX-5 demonstrated interactions with the binding site of the KcsA receptor. Additionally, substituting the Val74 residue in the CTX62-81 fragment with Lys74 resulted in reduced binding energy and mitigated the cytotoxic effects of CTX, while maintaining its insulinotropic activity
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Isolation and Identification of Endophytic Bacteria from Kumis Kucing Leaves (Orthosiphon aristatus Benth.) SECONDARY METABOLITE PROFILE IN STEM AND ROOT OF KEJI PLANT (Staurogyne elongata (Blume) Kuntze) Diversity and Potential Analysis of Liquid Biopesticide Bacteria for Fusarium sp. Control of Shallot -Basal Rot Morphogenesis Response of Leaf and Petiole Explant of Rootstock Apple (Malus sylvestris Mill.) to Auxin and Cytokinin A Comparative Profile of Free Radicals, Endogenous Antioxidants, and Cytokines in Mouse Model of Type 1 Diabetes Mellitus
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1