通过多重反应监测和硅学药物再设计发现治疗高级别胶质瘤的多靶点潜在候选药物

IF 2.2 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Omics A Journal of Integrative Biology Pub Date : 2024-02-01 Epub Date: 2024-02-06 DOI:10.1089/omi.2023.0256
Ayushi Verma, Rushda Patel, Atharva Mahale, Rujuta Vijay Thorat, Soumya Lipsa Rath, Epari Sridhar, Aliasgar Moiyadi, Sanjeeva Srivastava
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引用次数: 0

摘要

高级别胶质瘤(HGGs)是侵袭性极强的原发性脑肿瘤,死亡率很高。尽管临床研究和蛋白质组学研究中出现的生物标志物取得了显著进展,但有效药物和治疗靶点仍然有限。本研究利用靶向蛋白质组学、硅学分子对接和基于模拟的药物再利用来确定治疗 HGGs 的潜在候选药物。重要的是,我们根据以前的工作和已发表的文献,对可能在 HGG 发生和发展过程中起作用的差异表达蛋白进行了多反应监测(MRM)。此外,我们还利用定制的美国食品与药物管理局(FDA)批准的药物库进行了基于分子对接的药物再用途研究,以确定多靶点配体。利用 SwissADME 探索了 Pazopanib、Icotinib、Entrectinib、Regorafenib 和 Cabozantinib 等顶级候选药物的药物相似性。帕唑帕尼表现出与最多蛋白质的结合亲和力,并被考虑用于分子动力学模拟和细胞毒性试验。与单独使用替莫唑胺相比,帕唑帕尼和替莫唑胺联合治疗HGG细胞株时,细胞毒性和细胞增殖抑制作用均有所增强。据我们所知,这是第一项将 MRM 与分子对接和基于模拟的药物再利用相结合来确定治疗 HGG 潜在候选药物的研究。虽然本研究确定了五种多靶点潜在候选药物,但未来更大规模的临床研究对评估这些分子候选药物的疗效至关重要。本研究采用的研究策略和方法为药物发现和开发的创新提供了新的途径,尤其是对于治愈率较低的癌症而言,这可能会被证明是有用的。
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Multitarget Potential Drug Candidates for High-Grade Gliomas Identified by Multiple Reaction Monitoring Coupled with In Silico Drug Repurposing.

High-grade gliomas (HGGs) are extremely aggressive primary brain tumors with high mortality rates. Despite notable progress achieved by clinical research and biomarkers emerging from proteomics studies, efficacious drugs and therapeutic targets are limited. This study used targeted proteomics, in silico molecular docking, and simulation-based drug repurposing to identify potential drug candidates for HGGs. Importantly, we performed multiple reaction monitoring (MRM) on differentially expressed proteins with putative roles in the development and progression of HGGs based on our previous work and the published literature. Furthermore, in silico molecular docking-based drug repurposing was performed with a customized library of FDA-approved drugs to identify multitarget-directed ligands. The top drug candidates such as Pazopanib, Icotinib, Entrectinib, Regorafenib, and Cabozantinib were explored for their drug-likeness properties using the SwissADME. Pazopanib exhibited binding affinities with a maximum number of proteins and was considered for molecular dynamic simulations and cell toxicity assays. HGG cell lines showed enhanced cytotoxicity and cell proliferation inhibition with Pazopanib and Temozolomide combinatorial treatment compared to Temozolomide alone. To the best of our knowledge, this is the first study combining MRM with molecular docking and simulation-based drug repurposing to identify potential drug candidates for HGG. While the present study identified five multitarget-directed potential drug candidates, future clinical studies in larger cohorts are crucial to evaluate the efficacy of these molecular candidates. The research strategy and methodology used in the present study offer new avenues for innovation in drug discovery and development which may prove useful, particularly for cancers with low cure rates.

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来源期刊
Omics A Journal of Integrative Biology
Omics A Journal of Integrative Biology 生物-生物工程与应用微生物
CiteScore
6.00
自引率
12.10%
发文量
62
审稿时长
3 months
期刊介绍: OMICS: A Journal of Integrative Biology is the only peer-reviewed journal covering all trans-disciplinary OMICs-related areas, including data standards and sharing; applications for personalized medicine and public health practice; and social, legal, and ethics analysis. The Journal integrates global high-throughput and systems approaches to 21st century science from “cell to society” – seen from a post-genomics perspective.
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