从孤立的多电解质到星状集合体:序列异质性对内在无序神经丝低尾结构统计结构的作用。

IF 1.8 4区 物理与天体物理 Q4 CHEMISTRY, PHYSICAL The European Physical Journal E Pub Date : 2024-02-15 DOI:10.1140/epje/s10189-024-00409-8
Mathar Kravikass, Gil Koren, Omar A. Saleh, Roy Beck
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引用次数: 0

摘要

本征无序蛋白(IDPs)是缺乏稳定二级结构的蛋白质子集。鉴于其聚合性质,以往的均场近似方法被用来描述 IDPs 的统计结构。然而,氨基酸序列的异质性和复杂的分子间相互作用网络极大地阻碍了获得适当近似值的能力。神经丝蛋白(neurofilament low,NFLt)的内在无序尾部结构域就是这样一种情况,它由一个 50 个残基长的不带电结构域和一个 96 个残基长的带负电结构域组成。在这里,我们测量了两个 NFLt 变体,以确定 NFLt 的两个主要子域对其复杂相互作用和统计结构的影响。利用同步加速器小角 X 射线散射,我们发现 NFLt 的不带电结构域会诱导吸引性相互作用,使其自组装成星状聚合物刷。另一方面,当非带电结构域被截断时,剩余的带电 N 端结构域在溶液中保持孤立,具有典型的聚电解质特征。我们进一步讨论了聚合物刷中相互竞争的长程和短程相互作用是如何主导它们的集合结构的,并反过来讨论了它们对之前观察到的 NFL 本态和病态现象的影响。
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From isolated polyelectrolytes to star-like assemblies: the role of sequence heterogeneity on the statistical structure of the intrinsically disordered neurofilament-low tail domain

Intrinsically disordered proteins (IDPs) are a subset of proteins that lack stable secondary structure. Given their polymeric nature, previous mean-field approximations have been used to describe the statistical structure of IDPs. However, the amino-acid sequence heterogeneity and complex intermolecular interaction network have significantly impeded the ability to get proper approximations. One such case is the intrinsically disordered tail domain of neurofilament low (NFLt), which comprises a 50 residue-long uncharged domain followed by a 96 residue-long negatively charged domain. Here, we measure two NFLt variants to identify the impact of the NFLt two main subdomains on its complex interactions and statistical structure. Using synchrotron small-angle x-ray scattering, we find that the uncharged domain of the NFLt induces attractive interactions that cause it to self-assemble into star-like polymer brushes. On the other hand, when the uncharged domain is truncated, the remaining charged N-terminal domains remain isolated in solution with typical polyelectrolyte characteristics. We further discuss how competing long- and short-ranged interactions within the polymer brushes dominate their ensemble structure and, in turn, their implications on previously observed phenomena in NFL native and diseased states.

Visual schematic of the SAXS measurement results of the Neurofilament-low tail domain IDP (NFLt). NFLts assemble into star-like brushes through their hydrophobic N-terminal domains (marked in blue). In increasing salinity, brush height (h) is initially increased following a decrease while gaining additional tails to their assembly. Isolating the charged sub-domain of the NFLt (marked in red) results in isolated polyelectrolytes

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来源期刊
The European Physical Journal E
The European Physical Journal E CHEMISTRY, PHYSICAL-MATERIALS SCIENCE, MULTIDISCIPLINARY
CiteScore
2.60
自引率
5.60%
发文量
92
审稿时长
3 months
期刊介绍: EPJ E publishes papers describing advances in the understanding of physical aspects of Soft, Liquid and Living Systems. Soft matter is a generic term for a large group of condensed, often heterogeneous systems -- often also called complex fluids -- that display a large response to weak external perturbations and that possess properties governed by slow internal dynamics. Flowing matter refers to all systems that can actually flow, from simple to multiphase liquids, from foams to granular matter. Living matter concerns the new physics that emerges from novel insights into the properties and behaviours of living systems. Furthermore, it aims at developing new concepts and quantitative approaches for the study of biological phenomena. Approaches from soft matter physics and statistical physics play a key role in this research. The journal includes reports of experimental, computational and theoretical studies and appeals to the broad interdisciplinary communities including physics, chemistry, biology, mathematics and materials science.
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