利用阶跃化学反应网络中的虚空反应计算阈值电路

Rachel Anderson, Alberto Avila, Bin Fu, Timothy Gomez, Elise Grizzell, Aiden Massie, Gourab Mukhopadhyay, Adrian Salinas, Robert Schweller, Evan Tomai, Tim Wylie
{"title":"利用阶跃化学反应网络中的虚空反应计算阈值电路","authors":"Rachel Anderson, Alberto Avila, Bin Fu, Timothy Gomez, Elise Grizzell, Aiden Massie, Gourab Mukhopadhyay, Adrian Salinas, Robert Schweller, Evan Tomai, Tim Wylie","doi":"arxiv-2402.08220","DOIUrl":null,"url":null,"abstract":"We introduce a new model of \\emph{step} Chemical Reaction Networks (step\nCRNs), motivated by the step-wise addition of materials in standard lab\nprocedures. Step CRNs have ordered reactants that transform into products via\nreaction rules over a series of steps. We study an important subset of weak\nreaction rules, \\emph{void} rules, in which chemical species may only be\ndeleted but never changed. We demonstrate the capabilities of these simple\nlimited systems to simulate threshold circuits and compute functions using\nvarious configurations of rule sizes and step constructions, and prove that\nwithout steps, void rules are incapable of these computations, which further\nmotivates the step model. Additionally, we prove the coNP-completeness of\nverifying if a given step CRN computes a function, holding even for $O(1)$ step\nsystems.","PeriodicalId":501325,"journal":{"name":"arXiv - QuanBio - Molecular Networks","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2024-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Computing Threshold Circuits with Void Reactions in Step Chemical Reaction Networks\",\"authors\":\"Rachel Anderson, Alberto Avila, Bin Fu, Timothy Gomez, Elise Grizzell, Aiden Massie, Gourab Mukhopadhyay, Adrian Salinas, Robert Schweller, Evan Tomai, Tim Wylie\",\"doi\":\"arxiv-2402.08220\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We introduce a new model of \\\\emph{step} Chemical Reaction Networks (step\\nCRNs), motivated by the step-wise addition of materials in standard lab\\nprocedures. Step CRNs have ordered reactants that transform into products via\\nreaction rules over a series of steps. We study an important subset of weak\\nreaction rules, \\\\emph{void} rules, in which chemical species may only be\\ndeleted but never changed. We demonstrate the capabilities of these simple\\nlimited systems to simulate threshold circuits and compute functions using\\nvarious configurations of rule sizes and step constructions, and prove that\\nwithout steps, void rules are incapable of these computations, which further\\nmotivates the step model. Additionally, we prove the coNP-completeness of\\nverifying if a given step CRN computes a function, holding even for $O(1)$ step\\nsystems.\",\"PeriodicalId\":501325,\"journal\":{\"name\":\"arXiv - QuanBio - Molecular Networks\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-02-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Molecular Networks\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2402.08220\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Molecular Networks","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2402.08220","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

我们介绍了一种新的(emph{step})化学反应网络(stepCRNs)模型,其灵感来自于标准实验过程中材料的分步添加。步骤化学反应网络具有有序的反应物,这些反应物通过一系列步骤的反应规则转化为产物。我们研究了弱反应规则的一个重要子集--"emph{void}规则",在这个规则中,化学物种只能被删除,但永远不会发生变化。我们证明了这些简单有限系统模拟阈值电路的能力,以及利用规则大小和步骤构造的各种配置计算函数的能力,并证明了如果没有步骤,空洞规则就无法进行这些计算,这进一步推动了步骤模型的建立。此外,我们还证明了验证给定步骤 CRN 是否计算函数的 coNP 完备性,即使对于 $O(1)$ 步骤系统也是如此。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Computing Threshold Circuits with Void Reactions in Step Chemical Reaction Networks
We introduce a new model of \emph{step} Chemical Reaction Networks (step CRNs), motivated by the step-wise addition of materials in standard lab procedures. Step CRNs have ordered reactants that transform into products via reaction rules over a series of steps. We study an important subset of weak reaction rules, \emph{void} rules, in which chemical species may only be deleted but never changed. We demonstrate the capabilities of these simple limited systems to simulate threshold circuits and compute functions using various configurations of rule sizes and step constructions, and prove that without steps, void rules are incapable of these computations, which further motivates the step model. Additionally, we prove the coNP-completeness of verifying if a given step CRN computes a function, holding even for $O(1)$ step systems.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Multi-variable control to mitigate loads in CRISPRa networks Some bounds on positive equilibria in mass action networks Non-explosivity of endotactic stochastic reaction systems Limits on the computational expressivity of non-equilibrium biophysical processes When lowering temperature, the in vivo circadian clock in cyanobacteria follows and surpasses the in vitro protein clock trough the Hopf bifurcation
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1