Aman Dabral, Rajendra K Meena, Rajeev Shankhwar, Rama Kant, Shailesh Pandey, Harish S Ginwal, Maneesh S Bhandari
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A population structure analysis using structure software identified four major gene pool subgroups with clear-cut differences from each other. Principal coordinate analysis also supports the clustering patterns of the unweighted pair group method with arithmetic mean analysis. In the case of genetic diversity assessment, a total of seventy-three alleles were detected from twelve SSRs, with an average of 6.08 ± 0.71 per locus. Polymorphism information content ranged from 0.17 to 0.67 with a mean of 0.44 ± 0.045, indicating high levels of polymorphism across the genotypes. All the evaluated SSRs demonstrated moderate genetic diversity (observed heterozygosity = 0.31 ± 0.03; expected heterozygosity = 0.32 ± 0.03; and genetic differentiation = 0.295) among the sampled genotypes. These findings indicate significant genetic variability in the germplasm to warrant selection and have potential for a long-term tree improvement program of G. robusta in India. Study Implications: The study on population genetics of Grevillea robusta in exotic environments assessed probable gene pools, provenances, and genetic diversity in geographical distribution range of the species in the Indian scenario. The basic population genetic measures revealed the high diversity areas and probable seed zones of G. robusta in its exotic range. Importantly, the study will be helpful in the selection of candidate plus trees of G. robusta to further strengthen the genotype × environment interaction study for future breeding programs. Further, studying the genetic makeup for moderately diverse species offers valuable insights into evolutionary history, population dynamics, and ecological interactions, which may lead to conservation efforts and guidance for the management of trees such as G. robusta in their native and introduced regions.","PeriodicalId":12749,"journal":{"name":"Forest Science","volume":"75 1","pages":""},"PeriodicalIF":1.5000,"publicationDate":"2024-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Spatial Population Structuring and Genetic Analysis of Exotic Grevillea robusta in Northwestern India\",\"authors\":\"Aman Dabral, Rajendra K Meena, Rajeev Shankhwar, Rama Kant, Shailesh Pandey, Harish S Ginwal, Maneesh S Bhandari\",\"doi\":\"10.1093/forsci/fxae003\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The introduction of exotics is common in forestry, and majorly important species, like eucalypts, poplar, and Casuarina sp., occupy vast areas in the Indian subcontinent. Importantly, with the latest cost-effective sequencing techniques, genetic diversity research through molecular marker approaches on major exotics provides novel information for genetic improvement in economic traits with climatic adaptation. The study was carried out on Grevillea robusta to assess genetic relatedness and diversity among 228 genotypes belonging to five northwestern states in India. These genotypes were assayed using twelve simple sequence repeat (SSR) markers. A population structure analysis using structure software identified four major gene pool subgroups with clear-cut differences from each other. Principal coordinate analysis also supports the clustering patterns of the unweighted pair group method with arithmetic mean analysis. In the case of genetic diversity assessment, a total of seventy-three alleles were detected from twelve SSRs, with an average of 6.08 ± 0.71 per locus. Polymorphism information content ranged from 0.17 to 0.67 with a mean of 0.44 ± 0.045, indicating high levels of polymorphism across the genotypes. All the evaluated SSRs demonstrated moderate genetic diversity (observed heterozygosity = 0.31 ± 0.03; expected heterozygosity = 0.32 ± 0.03; and genetic differentiation = 0.295) among the sampled genotypes. These findings indicate significant genetic variability in the germplasm to warrant selection and have potential for a long-term tree improvement program of G. robusta in India. Study Implications: The study on population genetics of Grevillea robusta in exotic environments assessed probable gene pools, provenances, and genetic diversity in geographical distribution range of the species in the Indian scenario. The basic population genetic measures revealed the high diversity areas and probable seed zones of G. robusta in its exotic range. Importantly, the study will be helpful in the selection of candidate plus trees of G. robusta to further strengthen the genotype × environment interaction study for future breeding programs. 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引用次数: 0
摘要
引进外来物种在林业中很常见,主要的重要物种,如桉树、杨树和水杉,在印度次大陆占据了广阔的区域。重要的是,利用最新的高性价比测序技术,通过分子标记方法对主要外来物种进行遗传多样性研究,可为适应气候的经济性状遗传改良提供新的信息。这项研究针对 Grevillea robusta 进行,以评估印度西北部五个邦 228 个基因型的遗传亲缘关系和多样性。使用 12 个简单序列重复(SSR)标记对这些基因型进行了检测。利用结构软件进行的种群结构分析确定了四个主要基因库亚群,它们之间存在明显差异。主坐标分析也支持采用算术平均数分析的非加权成对分组法的聚类模式。在遗传多样性评估方面,12 个 SSR 共检测到 73 个等位基因,平均每个位点为 6.08 ± 0.71。多态性信息含量从 0.17 到 0.67 不等,平均值为 0.44 ± 0.045,表明不同基因型的多态性水平较高。所有评估的 SSR 在采样基因型中都显示出中等程度的遗传多样性(观察到的杂合度 = 0.31 ± 0.03;预期杂合度 = 0.32 ± 0.03;遗传差异 = 0.295)。这些研究结果表明,种质的遗传变异性很大,值得进行选育,并有可能在印度开展长期的 G. robusta 树改良计划。研究意义:这项关于外来环境中 Grevillea robusta 种群遗传学的研究评估了该物种在印度地理分布范围内的可能基因库、产地和遗传多样性。基本的种群遗传措施揭示了 G. robusta 在其外来分布区的高多样性区域和可能的种子区。重要的是,这项研究将有助于选择 G. robusta 的候选加号树种,进一步加强基因型与环境相互作用的研究,促进未来的育种计划。此外,研究中等多样性物种的基因构成可为了解其进化历史、种群动态和生态相互作用提供宝贵的信息,这可能有助于保护工作,并为在原产地和引进地区管理 G. robusta 等树木提供指导。
Spatial Population Structuring and Genetic Analysis of Exotic Grevillea robusta in Northwestern India
The introduction of exotics is common in forestry, and majorly important species, like eucalypts, poplar, and Casuarina sp., occupy vast areas in the Indian subcontinent. Importantly, with the latest cost-effective sequencing techniques, genetic diversity research through molecular marker approaches on major exotics provides novel information for genetic improvement in economic traits with climatic adaptation. The study was carried out on Grevillea robusta to assess genetic relatedness and diversity among 228 genotypes belonging to five northwestern states in India. These genotypes were assayed using twelve simple sequence repeat (SSR) markers. A population structure analysis using structure software identified four major gene pool subgroups with clear-cut differences from each other. Principal coordinate analysis also supports the clustering patterns of the unweighted pair group method with arithmetic mean analysis. In the case of genetic diversity assessment, a total of seventy-three alleles were detected from twelve SSRs, with an average of 6.08 ± 0.71 per locus. Polymorphism information content ranged from 0.17 to 0.67 with a mean of 0.44 ± 0.045, indicating high levels of polymorphism across the genotypes. All the evaluated SSRs demonstrated moderate genetic diversity (observed heterozygosity = 0.31 ± 0.03; expected heterozygosity = 0.32 ± 0.03; and genetic differentiation = 0.295) among the sampled genotypes. These findings indicate significant genetic variability in the germplasm to warrant selection and have potential for a long-term tree improvement program of G. robusta in India. Study Implications: The study on population genetics of Grevillea robusta in exotic environments assessed probable gene pools, provenances, and genetic diversity in geographical distribution range of the species in the Indian scenario. The basic population genetic measures revealed the high diversity areas and probable seed zones of G. robusta in its exotic range. Importantly, the study will be helpful in the selection of candidate plus trees of G. robusta to further strengthen the genotype × environment interaction study for future breeding programs. Further, studying the genetic makeup for moderately diverse species offers valuable insights into evolutionary history, population dynamics, and ecological interactions, which may lead to conservation efforts and guidance for the management of trees such as G. robusta in their native and introduced regions.
期刊介绍:
Forest Science is a peer-reviewed journal publishing fundamental and applied research that explores all aspects of natural and social sciences as they apply to the function and management of the forested ecosystems of the world. Topics include silviculture, forest management, biometrics, economics, entomology & pathology, fire & fuels management, forest ecology, genetics & tree improvement, geospatial technologies, harvesting & utilization, landscape ecology, operations research, forest policy, physiology, recreation, social sciences, soils & hydrology, and wildlife management.
Forest Science is published bimonthly in February, April, June, August, October, and December.