解密面包小麦中丝氨酸/精氨酸蛋白激酶的特征和功能

IF 2.2 Q3 GENETICS & HEREDITY Plant Gene Pub Date : 2024-02-15 DOI:10.1016/j.plgene.2024.100451
Deepika, Madhu, Santosh Kumar Upadhyay
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引用次数: 0

摘要

丝氨酸/精氨酸蛋白激酶(SRPKs)是丝氨酸-苏氨酸激酶家族的成员,可使参与交替剪接的富丝氨酸/精氨酸(SR)蛋白磷酸化。据报道,它们存在于包括哺乳动物在内的多种真核生物和少数植物中,但很少在重要的农作物物种中发现。在此,我们从主要农作物 Triticum aestivum 的所有三个亚基因组(A、B 和 D)中鉴定出了 9 个 TaSRPK 基因,并将它们在系统发育上分为两组。TaSRPK 具有保守的基因结构,有四个外显子。每个 TaSRPK 蛋白都由一个具有活性位点和 ATP 结合区的特征蛋白激酶结构域组成。启动子区域存在不同的顺式调控元件,并与各类转录因子和 miRNA 相互作用,这表明它们具有不同的功能。某些 TaSRPKs 在无性和有性生殖组织中的差异表达,以及在真菌病原体和各种非生物胁迫条件下的差异表达,进一步证实了它们在发育过程和胁迫响应中的关联。我们的研究强调了 TaSRPKs 的重要性,这可能有助于在未来的研究中对其进行详细表征。
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Deciphering the features and functions of serine/arginine protein kinases in bread wheat

Serine/arginine protein kinases (SRPKs) are members of the serine-threonine kinase family that phosphorylate the Serine/arginine-rich (SR) proteins involved in alternate splicing. They are reported in various eukaryotes including mammals, and in a few plants, but seldom explored in important crop species. Herein, we identified a total of nine TaSRPK genes from all three subgenomes (A, B, and D) of a staple crop Triticum aestivum, and phylogenetically classified them into two groups. The TaSRPKs have conserved gene architecture with four exons. Each TaSRPK protein consists of a characteristic protein kinase domain having an active site and ATP binding region. The occurrence of diverse cis-regulatory elements in the promoter region, and interaction with assorted groups of transcription factors and miRNAs exhibited their divergent functions. Differential expression of certain TaSRPKs in vegetative and reproductive tissues and in the presence of fungal pathogens and various abiotic stress conditions further assured their association during development processes and stress response. Our study highlighted the importance of TaSRPKs, which might be useful for their detailed characterization in future research.

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来源期刊
Plant Gene
Plant Gene Agricultural and Biological Sciences-Plant Science
CiteScore
4.50
自引率
0.00%
发文量
42
审稿时长
51 days
期刊介绍: Plant Gene publishes papers that focus on the regulation, expression, function and evolution of genes in plants, algae and other photosynthesizing organisms (e.g., cyanobacteria), and plant-associated microorganisms. Plant Gene strives to be a diverse plant journal and topics in multiple fields will be considered for publication. Although not limited to the following, some general topics include: Gene discovery and characterization, Gene regulation in response to environmental stress (e.g., salinity, drought, etc.), Genetic effects of transposable elements, Genetic control of secondary metabolic pathways and metabolic enzymes. Herbal Medicine - regulation and medicinal properties of plant products, Plant hormonal signaling, Plant evolutionary genetics, molecular evolution, population genetics, and phylogenetics, Profiling of plant gene expression and genetic variation, Plant-microbe interactions (e.g., influence of endophytes on gene expression; horizontal gene transfer studies; etc.), Agricultural genetics - biotechnology and crop improvement.
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