{"title":"解密面包小麦中丝氨酸/精氨酸蛋白激酶的特征和功能","authors":"Deepika, Madhu, Santosh Kumar Upadhyay","doi":"10.1016/j.plgene.2024.100451","DOIUrl":null,"url":null,"abstract":"<div><p>Serine/arginine protein kinases (SRPKs) are members of the serine-threonine kinase family that phosphorylate the Serine/arginine-rich (SR) proteins involved in alternate splicing. They are reported in various eukaryotes including mammals, and in a few plants, but seldom explored in important crop species. Herein, we identified a total of nine <em>TaSRPK</em> genes from all three subgenomes (A, B, and D) of a staple crop <em>Triticum aestivum,</em> and phylogenetically classified them into two groups. The <em>TaSRPKs</em> have conserved gene architecture with four exons. Each TaSRPK protein consists of a characteristic protein kinase domain having an active site and ATP binding region. The occurrence of diverse <em>cis-</em>regulatory elements in the promoter region, and interaction with assorted groups of transcription factors and miRNAs exhibited their divergent functions. Differential expression of certain <em>TaSRPKs</em> in vegetative and reproductive tissues and in the presence of fungal pathogens and various abiotic stress conditions further assured their association during development processes and stress response. Our study highlighted the importance of TaSRPKs, which might be useful for their detailed characterization in future research.</p></div>","PeriodicalId":38041,"journal":{"name":"Plant Gene","volume":"38 ","pages":"Article 100451"},"PeriodicalIF":2.2000,"publicationDate":"2024-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Deciphering the features and functions of serine/arginine protein kinases in bread wheat\",\"authors\":\"Deepika, Madhu, Santosh Kumar Upadhyay\",\"doi\":\"10.1016/j.plgene.2024.100451\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Serine/arginine protein kinases (SRPKs) are members of the serine-threonine kinase family that phosphorylate the Serine/arginine-rich (SR) proteins involved in alternate splicing. They are reported in various eukaryotes including mammals, and in a few plants, but seldom explored in important crop species. Herein, we identified a total of nine <em>TaSRPK</em> genes from all three subgenomes (A, B, and D) of a staple crop <em>Triticum aestivum,</em> and phylogenetically classified them into two groups. The <em>TaSRPKs</em> have conserved gene architecture with four exons. Each TaSRPK protein consists of a characteristic protein kinase domain having an active site and ATP binding region. The occurrence of diverse <em>cis-</em>regulatory elements in the promoter region, and interaction with assorted groups of transcription factors and miRNAs exhibited their divergent functions. Differential expression of certain <em>TaSRPKs</em> in vegetative and reproductive tissues and in the presence of fungal pathogens and various abiotic stress conditions further assured their association during development processes and stress response. Our study highlighted the importance of TaSRPKs, which might be useful for their detailed characterization in future research.</p></div>\",\"PeriodicalId\":38041,\"journal\":{\"name\":\"Plant Gene\",\"volume\":\"38 \",\"pages\":\"Article 100451\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2024-02-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Plant Gene\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352407324000064\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352407324000064","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Deciphering the features and functions of serine/arginine protein kinases in bread wheat
Serine/arginine protein kinases (SRPKs) are members of the serine-threonine kinase family that phosphorylate the Serine/arginine-rich (SR) proteins involved in alternate splicing. They are reported in various eukaryotes including mammals, and in a few plants, but seldom explored in important crop species. Herein, we identified a total of nine TaSRPK genes from all three subgenomes (A, B, and D) of a staple crop Triticum aestivum, and phylogenetically classified them into two groups. The TaSRPKs have conserved gene architecture with four exons. Each TaSRPK protein consists of a characteristic protein kinase domain having an active site and ATP binding region. The occurrence of diverse cis-regulatory elements in the promoter region, and interaction with assorted groups of transcription factors and miRNAs exhibited their divergent functions. Differential expression of certain TaSRPKs in vegetative and reproductive tissues and in the presence of fungal pathogens and various abiotic stress conditions further assured their association during development processes and stress response. Our study highlighted the importance of TaSRPKs, which might be useful for their detailed characterization in future research.
Plant GeneAgricultural and Biological Sciences-Plant Science
CiteScore
4.50
自引率
0.00%
发文量
42
审稿时长
51 days
期刊介绍:
Plant Gene publishes papers that focus on the regulation, expression, function and evolution of genes in plants, algae and other photosynthesizing organisms (e.g., cyanobacteria), and plant-associated microorganisms. Plant Gene strives to be a diverse plant journal and topics in multiple fields will be considered for publication. Although not limited to the following, some general topics include: Gene discovery and characterization, Gene regulation in response to environmental stress (e.g., salinity, drought, etc.), Genetic effects of transposable elements, Genetic control of secondary metabolic pathways and metabolic enzymes. Herbal Medicine - regulation and medicinal properties of plant products, Plant hormonal signaling, Plant evolutionary genetics, molecular evolution, population genetics, and phylogenetics, Profiling of plant gene expression and genetic variation, Plant-microbe interactions (e.g., influence of endophytes on gene expression; horizontal gene transfer studies; etc.), Agricultural genetics - biotechnology and crop improvement.