利用响应面方法优化浓度参数,使噬菌体回收值最大化:确定 Erwinia amylovoraEA1T1.B3 噬菌体最佳浓度参数的案例研究

IF 2.3 3区 农林科学 Q1 AGRONOMY Plant Pathology Pub Date : 2024-02-22 DOI:10.1111/ppa.13882
Kubra Guven, Esra Ekiz, Eylul Evran, Emine Kubra Tayyarcan, Ismail Hakki Boyaci
{"title":"利用响应面方法优化浓度参数,使噬菌体回收值最大化:确定 Erwinia amylovoraEA1T1.B3 噬菌体最佳浓度参数的案例研究","authors":"Kubra Guven, Esra Ekiz, Eylul Evran, Emine Kubra Tayyarcan, Ismail Hakki Boyaci","doi":"10.1111/ppa.13882","DOIUrl":null,"url":null,"abstract":"Bacteriophages have emerged as effective antimicrobial agents in combating pathogenic bacteria. To successfully apply phages in real‐life scenarios, it is crucial to optimize their large‐scale production, concentration and purification processes. In this study, our objective was to optimize the phage concentration parameters with a high recovery rate within a shorter time and minimum chemical consumption. We isolated and characterized a specific <jats:italic>Erwinia amylovora</jats:italic> phage. Subsequently, we employed response surface methodology (RSM) combined with a three‐factor central composite design to optimize the phage recovery. The factors considered were polyethylene glycol (PEG) concentration, NaCl concentration and incubation time. The optimized values for PEG, NaCl and incubation time, which resulted in a maximum recovery rate of 85.37%, were determined as 18%, 2.38 M and 0 h, respectively. This finding indicates that the concentration step, which traditionally took up to 18 h with a recovery rate of 65%, can now be accomplished in a significantly shorter time with an improved recovery rate. Our study demonstrates the effectiveness of RSM to identify the optimum conditions for phage precipitation. This approach allows for the rapid and efficient design of precipitation protocols tailored to specific bacteriophages, resulting in shorter processing times and higher recovery rates.","PeriodicalId":20075,"journal":{"name":"Plant Pathology","volume":"59 1","pages":""},"PeriodicalIF":2.3000,"publicationDate":"2024-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Optimization of concentration parameters for maximizing bacteriophage recovery value using response surface methodology: A case study on determining the optimal concentration parameters for Erwinia amylovoraEA1T1.B3 phage\",\"authors\":\"Kubra Guven, Esra Ekiz, Eylul Evran, Emine Kubra Tayyarcan, Ismail Hakki Boyaci\",\"doi\":\"10.1111/ppa.13882\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Bacteriophages have emerged as effective antimicrobial agents in combating pathogenic bacteria. To successfully apply phages in real‐life scenarios, it is crucial to optimize their large‐scale production, concentration and purification processes. In this study, our objective was to optimize the phage concentration parameters with a high recovery rate within a shorter time and minimum chemical consumption. We isolated and characterized a specific <jats:italic>Erwinia amylovora</jats:italic> phage. Subsequently, we employed response surface methodology (RSM) combined with a three‐factor central composite design to optimize the phage recovery. The factors considered were polyethylene glycol (PEG) concentration, NaCl concentration and incubation time. The optimized values for PEG, NaCl and incubation time, which resulted in a maximum recovery rate of 85.37%, were determined as 18%, 2.38 M and 0 h, respectively. This finding indicates that the concentration step, which traditionally took up to 18 h with a recovery rate of 65%, can now be accomplished in a significantly shorter time with an improved recovery rate. Our study demonstrates the effectiveness of RSM to identify the optimum conditions for phage precipitation. This approach allows for the rapid and efficient design of precipitation protocols tailored to specific bacteriophages, resulting in shorter processing times and higher recovery rates.\",\"PeriodicalId\":20075,\"journal\":{\"name\":\"Plant Pathology\",\"volume\":\"59 1\",\"pages\":\"\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2024-02-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Plant Pathology\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.1111/ppa.13882\",\"RegionNum\":3,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"AGRONOMY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Pathology","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1111/ppa.13882","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"AGRONOMY","Score":null,"Total":0}
引用次数: 0

摘要

噬菌体已成为对抗致病细菌的有效抗菌剂。要在实际生活中成功应用噬菌体,优化其大规模生产、浓缩和纯化过程至关重要。在本研究中,我们的目标是优化噬菌体浓缩参数,在更短的时间内实现高回收率和最低化学消耗。我们分离并鉴定了一种特异性 Erwinia amylovora 噬菌体。随后,我们采用响应面方法(RSM)结合三因素中心复合设计来优化噬菌体的回收率。考虑的因素包括聚乙二醇(PEG)浓度、NaCl 浓度和培养时间。PEG 浓度、NaCl 浓度和培养时间的优化值分别为 18%、2.38 M 和 0 h,最大回收率为 85.37%。这一结果表明,传统上需要长达 18 小时的浓缩步骤(回收率为 65%)现在可以在更短的时间内完成,同时提高回收率。我们的研究证明了 RSM 在确定噬菌体沉淀最佳条件方面的有效性。这种方法可以快速有效地设计出适合特定噬菌体的沉淀方案,从而缩短处理时间,提高回收率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Optimization of concentration parameters for maximizing bacteriophage recovery value using response surface methodology: A case study on determining the optimal concentration parameters for Erwinia amylovoraEA1T1.B3 phage
Bacteriophages have emerged as effective antimicrobial agents in combating pathogenic bacteria. To successfully apply phages in real‐life scenarios, it is crucial to optimize their large‐scale production, concentration and purification processes. In this study, our objective was to optimize the phage concentration parameters with a high recovery rate within a shorter time and minimum chemical consumption. We isolated and characterized a specific Erwinia amylovora phage. Subsequently, we employed response surface methodology (RSM) combined with a three‐factor central composite design to optimize the phage recovery. The factors considered were polyethylene glycol (PEG) concentration, NaCl concentration and incubation time. The optimized values for PEG, NaCl and incubation time, which resulted in a maximum recovery rate of 85.37%, were determined as 18%, 2.38 M and 0 h, respectively. This finding indicates that the concentration step, which traditionally took up to 18 h with a recovery rate of 65%, can now be accomplished in a significantly shorter time with an improved recovery rate. Our study demonstrates the effectiveness of RSM to identify the optimum conditions for phage precipitation. This approach allows for the rapid and efficient design of precipitation protocols tailored to specific bacteriophages, resulting in shorter processing times and higher recovery rates.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Plant Pathology
Plant Pathology 生物-农艺学
CiteScore
5.60
自引率
7.40%
发文量
147
审稿时长
3 months
期刊介绍: This international journal, owned and edited by the British Society for Plant Pathology, covers all aspects of plant pathology and reaches subscribers in 80 countries. Top quality original research papers and critical reviews from around the world cover: diseases of temperate and tropical plants caused by fungi, bacteria, viruses, phytoplasmas and nematodes; physiological, biochemical, molecular, ecological, genetic and economic aspects of plant pathology; disease epidemiology and modelling; disease appraisal and crop loss assessment; and plant disease control and disease-related crop management.
期刊最新文献
Meloidogyne hapla dominates plant‐parasitic nematode communities associated with kiwifruit orchards in Portugal The growth‐promoting effects of Bacillus amyloliquefaciens W82T‐44 on soybean and its biocontrol potential against soybean Phytophthora root rot Genetic diversity and incidence of cassava bacterial blight (CBB) caused by Xanthomonas phaseoli pv. manihotis in Burkina Faso Control of root rot of red raspberries caused by Phytophthora fragariae var. rubi Molecular epidemiology of Cercospora leaf spot on resistant and susceptible sugar beet hybrids
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1