开展 eDNA 生物多样性研究--比较水衍生分子分类群与传统调查方法

IF 3.8 3区 地球科学 Q1 OCEANOGRAPHY Progress in Oceanography Pub Date : 2024-03-01 DOI:10.1016/j.pocean.2024.103230
Jon-Ivar Westgaard , Kim Præbel , Per Arneberg , Brian P. Ulaski , Randi Ingvaldsen , Owen S. Wangensteen , Torild Johansen
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引用次数: 0

摘要

以可持续的方式管理自然资源需要了解生态系统的复杂性以及与生态系统不同部分相关的物种。这些知识大多来自传统的取样方法(如不同类型的拖网)。对环境 DNA(eDNA)的分析可以提供更多的知识,是对传统方法的补充。在本试点研究中,我们在斯瓦尔巴群岛北部和西部(NWS)以及巴伦支海西南部(SWBS)两个地理区域进行了 eDNA 采样。将拖网、哺乳动物目测识别和 eDNA 采集相结合,有助于对鱼类和海洋哺乳动物的多样性和物种组成进行可靠分析。通过对 eDNA 样本进行 12S MiFish 代谢编码,我们发现结合 eDNA 数据可提供有关研究区域鱼类和海洋哺乳动物多样性的更多信息。通过将 eDNA 数据添加到拖网数据中,我们发现鱼类类群的丰富度从 32 个增加到 49 个。通过 eDNA,我们发现两个研究区域之间鱼类群落的多样性和组成存在显著差异。考虑到降解和稀释因素,我们推测这些结果代表的是巴伦支海的常住物种,而来自其他地区的长期迁移 DNA 的可能性较小。
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Towards eDNA informed biodiversity studies – Comparing water derived molecular taxa with traditional survey methods

Managing natural resources in a sustainable manner requires understanding the complexity of ecosystems and the species that are associated with the different parts of the ecosystem. Much of this knowledge is derived from traditional sampling methods (e.g., different types of trawls). The analysis of environmental DNA (eDNA) can provide increased knowledge, complementary to the traditional methods. In the present pilot study, we sampled eDNA from two geographical areas, north and west of Svalbard (NWS) and in the southwestern Barents Sea (SWBS). The combination of trawling, visual identification of mammals and eDNA collection facilitated a robust analysis of fish and marine mammal diversity and species composition. Through 12S MiFish metabarcoding of the eDNA samples, we found that incorporating eDNA data provided an additional level of information on both the diversity of fish and marine mammals in the study areas. By adding eDNA data to the trawl data, we found that richness increased from 32 to 49 fish taxa. Significant differences in diversity and composition of the fish communities were detected by eDNA between the two study areas. Considering degradation and dilution factors it is postulated that the results represent resident species to the Barents Sea and that long -transported DNA from other areas are less likely.

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来源期刊
Progress in Oceanography
Progress in Oceanography 地学-海洋学
CiteScore
7.20
自引率
4.90%
发文量
138
审稿时长
3 months
期刊介绍: Progress in Oceanography publishes the longer, more comprehensive papers that most oceanographers feel are necessary, on occasion, to do justice to their work. Contributions are generally either a review of an aspect of oceanography or a treatise on an expanding oceanographic subject. The articles cover the entire spectrum of disciplines within the science of oceanography. Occasionally volumes are devoted to collections of papers and conference proceedings of exceptional interest. Essential reading for all oceanographers.
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