{"title":"聚合物系统粗粒度模拟最新进展小结","authors":"Huimin Gao, Zhuochen Yu, Xuze Zhang, Xiangkun Yu, Jiyuan Xing, Youliang Zhu, Hu-Jun Qian, Zhong-Yuan Lu","doi":"10.1016/j.cjsc.2024.100266","DOIUrl":null,"url":null,"abstract":"<div><p>Molecular dynamics simulation is a powerful tool in the study of polymeric systems. Among various simulation methods, coarse-grained (CG) model is particularly impactful because it effectively reduces the computational complexity and enables the simulation of large-scale polymer systems. In this review, we briefly summarize recent progresses in our group on the development of CG simulation methods, models, as well as in the software development. By compiling the CG models and various simulation methods, we have successfully developed a GPU-accelerated large-scale molecular simulation toolkit (GALAMOST), which provides an efficient platform for polymer simulations. We further developed the new-generation PyGAMD (Python GPU-Accelerated MD Software, website: <span>http://pygamd.com/</span><svg><path></path></svg>) software based on the Python platform, which makes the polymer simulation more powerful, flexible and user-friendly. In addition, some recent application cases in different polymer systems are also introduced. The aspiration of this review is to assist researchers in understanding the role of molecular simulations in the design and development of advanced polymer materials not only for academic researches, but also for possible industrial applications.</p></div>","PeriodicalId":10151,"journal":{"name":"结构化学","volume":"43 5","pages":"Article 100266"},"PeriodicalIF":5.9000,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A mini review of the recent progress in coarse-grained simulation of polymer systems\",\"authors\":\"Huimin Gao, Zhuochen Yu, Xuze Zhang, Xiangkun Yu, Jiyuan Xing, Youliang Zhu, Hu-Jun Qian, Zhong-Yuan Lu\",\"doi\":\"10.1016/j.cjsc.2024.100266\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Molecular dynamics simulation is a powerful tool in the study of polymeric systems. Among various simulation methods, coarse-grained (CG) model is particularly impactful because it effectively reduces the computational complexity and enables the simulation of large-scale polymer systems. In this review, we briefly summarize recent progresses in our group on the development of CG simulation methods, models, as well as in the software development. By compiling the CG models and various simulation methods, we have successfully developed a GPU-accelerated large-scale molecular simulation toolkit (GALAMOST), which provides an efficient platform for polymer simulations. We further developed the new-generation PyGAMD (Python GPU-Accelerated MD Software, website: <span>http://pygamd.com/</span><svg><path></path></svg>) software based on the Python platform, which makes the polymer simulation more powerful, flexible and user-friendly. In addition, some recent application cases in different polymer systems are also introduced. The aspiration of this review is to assist researchers in understanding the role of molecular simulations in the design and development of advanced polymer materials not only for academic researches, but also for possible industrial applications.</p></div>\",\"PeriodicalId\":10151,\"journal\":{\"name\":\"结构化学\",\"volume\":\"43 5\",\"pages\":\"Article 100266\"},\"PeriodicalIF\":5.9000,\"publicationDate\":\"2024-05-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"结构化学\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0254586124000709\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, INORGANIC & NUCLEAR\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"结构化学","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0254586124000709","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, INORGANIC & NUCLEAR","Score":null,"Total":0}
A mini review of the recent progress in coarse-grained simulation of polymer systems
Molecular dynamics simulation is a powerful tool in the study of polymeric systems. Among various simulation methods, coarse-grained (CG) model is particularly impactful because it effectively reduces the computational complexity and enables the simulation of large-scale polymer systems. In this review, we briefly summarize recent progresses in our group on the development of CG simulation methods, models, as well as in the software development. By compiling the CG models and various simulation methods, we have successfully developed a GPU-accelerated large-scale molecular simulation toolkit (GALAMOST), which provides an efficient platform for polymer simulations. We further developed the new-generation PyGAMD (Python GPU-Accelerated MD Software, website: http://pygamd.com/) software based on the Python platform, which makes the polymer simulation more powerful, flexible and user-friendly. In addition, some recent application cases in different polymer systems are also introduced. The aspiration of this review is to assist researchers in understanding the role of molecular simulations in the design and development of advanced polymer materials not only for academic researches, but also for possible industrial applications.
期刊介绍:
Chinese Journal of Structural Chemistry “JIEGOU HUAXUE ”, an academic journal consisting of reviews, articles, communications and notes, provides a forum for the reporting and discussion of current novel research achievements in the fields of structural chemistry, crystallography, spectroscopy, quantum chemistry, pharmaceutical chemistry, biochemistry, material science, etc. Structural Chemistry has been indexed by SCI, CA, and some other prestigious publications.