ORTEGA v1.0:使用运动数据进行情境感知交互分析的开源 Python 软件包。

IF 3.4 1区 生物学 Q2 ECOLOGY Movement Ecology Pub Date : 2024-03-09 DOI:10.1186/s40462-024-00460-2
Rongxiang Su, Yifei Liu, Somayeh Dodge
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引用次数: 0

摘要

背景:通过空间和时间上的运动进行交互分析有助于了解个体之间的社会关系及其在生态系统中的动态变化。虽然利用运动数据进行交互分析的计算方法研究取得了令人振奋的发展,但现有方法的可重复性和可复制性仍面临挑战。目前的运动交互分析工具通常不太容易在生态研究中广泛使用或测试:为了应对这些挑战,本文介绍了 ORTEGA(一种对象时效地理分析工具),它是一个开源 Python 软件包,用于根据对运动实体的观察来分析运动实体对之间潜在的相互作用。ORTEGA 是基于新出现的一种量化动物间时空互动模式的时间地理方法开发的。通过案例研究,展示并评估了 ORTEGA 在动物运动数据中追踪动态互动模式的功能。除了向社区免费提供分析代码和数据外,开发的软件包还对 ORTEGA 现有的理论发展进行了扩展,纳入了上下文感知能力,为互动分析提供信息:ORTEGA 有两项重要功能:(1) 使用基于时间地理的方法从两个或多个实体的运动数据中识别潜在交互(如相遇、并发交互、延迟交互)的功能;(2) 计算潜在交互事件属性的能力,包括开始时间、结束时间、交互持续时间以及运动参数(如速度和移动方向)的差异,并对识别出的潜在交互事件进行上下文分析。
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ORTEGA v1.0: an open-source Python package for context-aware interaction analysis using movement data.

Background: Interaction analysis via movement in space and time contributes to understanding social relationships among individuals and their dynamics in ecological systems. While there is an exciting growth in research in computational methods for interaction analysis using movement data, there remain challenges regarding reproducibility and replicability of the existing approaches. The current movement interaction analysis tools are often less accessible or tested for broader use in ecological research.

Results: To address these challenges, this paper presents ORTEGA, an Object-oRiented TimE-Geographic Analytical tool, as an open-source Python package for analyzing potential interactions between pairs of moving entities based on the observation of their movement. ORTEGA is developed based on one of the newly emerged time-geographic approaches for quantifying space-time interaction patterns among animals. A case study is presented to demonstrate and evaluate the functionalities of ORTEGA in tracing dynamic interaction patterns in animal movement data. Besides making the analytical code and data freely available to the community, the developed package also offers an extension of the existing theoretical development of ORTEGA for incorporating a context-aware ability to inform interaction analysis.

Conclusions: ORTEGA contributes two significant capabilities: (1) the functions to identify potential interactions (e.g., encounters, concurrent interactions, delayed interactions) from movement data of two or more entities using a time-geographic-based approach; and (2) the capacity to compute attributes of potential interaction events including start time, end time, interaction duration, and difference in movement parameters such as speed and moving direction, and also contextualize the identified potential interaction events.

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来源期刊
Movement Ecology
Movement Ecology Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
6.60
自引率
4.90%
发文量
47
审稿时长
23 weeks
期刊介绍: Movement Ecology is an open-access interdisciplinary journal publishing novel insights from empirical and theoretical approaches into the ecology of movement of the whole organism - either animals, plants or microorganisms - as the central theme. We welcome manuscripts on any taxa and any movement phenomena (e.g. foraging, dispersal and seasonal migration) addressing important research questions on the patterns, mechanisms, causes and consequences of organismal movement. Manuscripts will be rigorously peer-reviewed to ensure novelty and high quality.
期刊最新文献
How do red foxes (Vulpes vulpes) explore their environment? Characteristics of movement patterns in time and space. North American avian species that migrate in flocks show greater long-term non-breeding range shift rates. Seasonal coastal residency and large-scale migration of two grey mullet species in temperate European waters. The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake. Density-dependent distributions of hosts and parasitoids resulting from density-independent dispersal rules: implications for host-parasitoid interactions and population dynamics.
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