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How do red foxes (Vulpes vulpes) explore their environment? Characteristics of movement patterns in time and space. 红狐(Vulpes Vulpes)如何探索它们的环境?运动模式在时间和空间上的特征。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2025-01-16 DOI: 10.1186/s40462-024-00526-1
Felicitas Oehler, Robert Hagen, Klaus Hackländer, Zea Walton, Kumar Ashish, Janosch Arnold

Background: Many animals must adapt their movements to different conditions encountered during different life phases, such as when exploring extraterritorial areas for dispersal, foraging or breeding. To better understand how animals move in different movement phases, we asked whether movement patterns differ between one way directed movements, such as during the transient phase of dispersal or two way exploratory-like movements such as during extraterritorial excursions or stationary movements.

Methods: We GPS collared red foxes in a rural area in southern Germany between 2020 and 2023. Using a random forest model, we analyzed different movement parameters, habitat features-for example landclasses and distances to linear structures-and time variables (season and time of day) within red fox exploratory, transient and stationary movement phases to characterize phase specific movement patterns and to investigate the influence of different variables on classifying the movement phases.

Results: According to the classification model, the movement patterns in the different phases were characterized most strongly by the variables persistence velocity, season, step length and distance to linear structures. In extraterritorial areas, red foxes either moved straight with high persistence velocity, close to anthropogenic linear structures during transient movements, or more tortuously containing a higher variance in turning angles and a decrease in persistence velocity during exploratory-like movements. Transient movements mainly took place during autumn, whereas exploratory-like movements were mainly conducted during winter and spring.

Conclusion: Movement patterns of red foxes differ between transient, exploratory and stationary phases, reflecting displacement, searching and resident movement strategies. Our results signify the importance of the combined effect of using movement, habitat and time variables together in analyzing movement phases. High movement variability may allow red foxes to navigate in extraterritorial areas efficiently and to adapt to different environmental and behavioral conditions.

背景:许多动物必须适应不同生命阶段遇到的不同条件,例如在探索域外区域进行扩散、觅食或繁殖时。为了更好地理解动物在不同的运动阶段是如何运动的,我们询问了单向定向运动(如在短暂的分散阶段)和双向探索式运动(如在域外漫游或静止运动期间)之间的运动模式是否不同。方法:在2020年至2023年期间,我们在德国南部农村地区的红狐进行了GPS项圈。利用随机森林模型,我们分析了红狐在探索、短暂和静止运动阶段的不同运动参数、栖息地特征(例如土地类别和到线性结构的距离)和时间变量(季节和时间),以表征阶段特定的运动模式,并研究不同变量对运动阶段分类的影响。结果:根据分类模型,持续速度、季节、步长和到线性结构的距离等变量对不同阶段的移动模式具有最强烈的特征。在域外区域,红狐要么以较高的持续速度直线移动,在短暂运动期间接近于人为的线性结构,要么在探索性运动期间更曲折地包含更高的转角变化和持续速度下降。瞬时运动主要发生在秋季,而探测型运动主要发生在冬季和春季。结论:红狐在短暂、探索和静止阶段的运动模式不同,反映了位移、搜索和停留的运动策略。我们的研究结果表明,在分析运动阶段时,运动、生境和时间变量共同作用的重要性。高运动变异性可能使红狐在域外区域有效地导航,并适应不同的环境和行为条件。
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引用次数: 0
North American avian species that migrate in flocks show greater long-term non-breeding range shift rates. 成群迁徙的北美鸟类表现出更大的长期非繁殖范围迁移率。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2025-01-13 DOI: 10.1186/s40462-024-00527-0
Stephen H Vickers, Timothy D Meehan, Nicole L Michel, Aldina M A Franco, James J Gilroy

Background: Many species are exhibiting range shifts associated with anthropogenic change. For migratory species, colonisation of new areas can require novel migratory programmes that facilitate navigation between independently-shifting seasonal ranges. Therefore, in some cases range-shifts may be limited by the capacity for novel migratory programmes to be transferred between generations, which can be genetically and socially mediated.

Methods: Here we used 50 years of North American Breeding Bird Survey and Audubon Christmas Bird Count data to test the prediction that breeding and/or non-breeding range-shifts are more prevalent among flocking migrants, which possess a capacity for rapid social transmission of novel migration routes.

Results: Across 122 North American bird species, social migration was a significant positive predictor for the magnitude of non-breeding centre of abundance (COA) shift within our study region (conterminous United States and Southern Canada). Across a subset of 81 species where age-structured flocking was determined, migrating in mixed-age flocks produced the greatest shifts and solo migrants the lowest. Flocking was not a significant predictor of breeding COA shifts, which were better explained by absolute population trends and migration distance.

Conclusions: Our results suggest that social grouping may play an important role in facilitating non-breeding distributional responses to climate change in migratory species. We highlight the need to gain a better understanding of migratory programme inheritance, and how this influences spatiotemporal population dynamics under environmental change.

背景:许多物种表现出与人为变化相关的范围变化。对于迁徙物种来说,在新地区定居可能需要新的迁徙计划,以便于在独立变化的季节范围之间导航。因此,在某些情况下,范围转移可能受到新移徙方案在代际间转移的能力的限制,这可能是遗传和社会媒介。方法:利用50年的北美繁殖鸟类调查和奥杜邦圣诞鸟类统计数据,验证了繁殖和/或非繁殖范围转移在群集候鸟中更为普遍的预测,这些候鸟具有快速社会传播新迁徙路线的能力。结果:在122种北美鸟类中,社会迁徙是我们研究区域(毗邻美国和加拿大南部)非繁殖丰度中心(COA)转移幅度的显著正预测因子。在确定年龄结构群体的81个物种的子集中,混合年龄群体的迁徙产生了最大的变化,而单独迁徙产生了最低的变化。群集不是种群COA变化的显著预测因子,种群绝对趋势和迁移距离可以更好地解释种群COA变化。结论:社会分组可能在促进迁徙物种对气候变化的非繁殖性分布响应中发挥重要作用。我们强调需要更好地了解迁徙计划的遗传,以及这如何影响环境变化下的时空人口动态。
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引用次数: 0
Seasonal coastal residency and large-scale migration of two grey mullet species in temperate European waters. 两种灰色鲻鱼在欧洲温带水域的季节性沿海居住和大规模迁徙。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2025-01-11 DOI: 10.1186/s40462-024-00528-z
Jena E Edwards, Anthonie D Buijse, Hendrik V Winter, Allert I Bijleveld

Grey mullets (family Mugilidae) are widespread across coastal, brackish, and freshwater habitats, and have supported fisheries for millennia. Despite their global distribution and commercial value, little is known about their movement ecology and its role in the co-existence of sympatric mullet species. Gaps in knowledge about migratory behaviour, seasonal occurrence, and movement scales have also impeded effective management, highlighting the need for further research. This study aimed to identify key habitats and timing of grey mullet presence across the Dutch Wadden Sea, North Sea, and freshwater areas, and to explore potential behavioral differences between two grey mullet species: thicklip mullet (Chelon labrosus) and thinlip mullet (Chelon ramada). Using acoustic telemetry, we tracked 86 tagged grey mullet over three years (thicklip mullet, N = 74; thinlip mullet, N = 12), combining data from 100 local acoustic receivers and the European Tracking Network. Both species were detected in the Wadden Sea from April to November, however, thinlip mullet arrived in the Wadden Sea earlier than thicklip mullet (median date = May 16 vs. June 7). Individual residency in the Wadden Sea lasted a median 97 days for thicklip mullet and 94 days for thinlip mullet. Thinlip mullet were also detected by more receivers and over a larger area than thicklip mullet, indicating differences in movement behaviour. Both species showed an affinity for receivers near major harbours, with thinlip mullet more often detected near fresh water outflows. Seasonal migrations between coastal and offshore waters were also observed, with one thinlip mullet returning to freshwater across consecutive years. North Sea detections spanned ten months, with a gap during the presumed spawning period (Jan-Feb). Our data suggest that thinlip mullet show a preference for deeper gullies while thicklip mullet may spend more time in shallow areas and flooded tidal flats. These findings highlight the importance of the Wadden Sea as a seasonal foraging ground and provide insights into the migratory patterns of grey mullets.

灰鲻鱼广泛分布在沿海、咸淡水和淡水栖息地,几千年来一直支持着渔业。尽管它们分布在全球,具有商业价值,但人们对它们的运动生态学及其在同域鲻鱼物种共存中的作用知之甚少。在迁徙行为、季节发生和迁徙规模方面的知识差距也阻碍了有效的管理,突出了进一步研究的必要性。本研究旨在确定荷兰瓦登海、北海和淡水地区灰鲻鱼的主要栖息地和存在时间,并探讨两种灰鲻鱼:厚唇鲻鱼(Chelon labrosus)和薄唇鲻鱼(Chelon ramada)之间潜在的行为差异。使用声波遥测技术,我们在三年内跟踪了86条标记的灰色鲻鱼(厚唇鲻鱼,N = 74;细唇鲻鱼,N = 12),结合了来自100个当地声学接收器和欧洲跟踪网络的数据。两种鱼均于4 - 11月在瓦登海被发现,但薄唇鲻鱼早于厚唇鲻鱼到达瓦登海(中位数日期为5月16日vs. 6月7日)。厚唇鲻鱼个体在瓦登海的停留时间中位数为97天,薄唇鲻鱼为94天。与厚唇鲻鱼相比,薄唇鲻鱼也被更多的接受者和更大的区域检测到,这表明了运动行为的差异。这两个物种都对主要港口附近的接收器表现出亲和力,薄唇鲻鱼更常在淡水出口附近被发现。沿海和近海水域之间的季节性迁徙也被观察到,有一条薄唇鲻鱼连续几年回到淡水中。北海的探测跨越了10个月,在假定的产卵期(1 - 2月)有一个间隙。我们的数据表明,薄唇鲻鱼表现出对较深沟壑的偏好,而厚唇鲻鱼可能在浅水地区和淹没的潮滩上度过更多的时间。这些发现突出了瓦登海作为季节性觅食地的重要性,并为灰鲻鱼的迁徙模式提供了见解。
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引用次数: 0
The influence of thermal and hypoxia induced habitat compression on walleye (Sander vitreus) movements in a temperate lake. 温带湖泊温度和缺氧诱导的生境压缩对玻璃体白眼鱼运动的影响。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2025-01-07 DOI: 10.1186/s40462-024-00505-6
J L Brooks, E J I Lédée, S M Larocque, S J Cooke, E Brown, J D Midwood

Background: Globally, temperate lakes are experiencing increases in surface water temperatures, extended periods of summer stratification, and decreases of both surface and deep water dissolved oxygen (DO). The distribution of fish is influenced by a variety of factors, but water temperature and dissolved oxygen are known to be particularly constraining such that with climate change, fish will likely feel the "squeeze" from above and below.

Methods: This study used acoustic telemetry to explore the effects of both thermal stratification and the deoxygenation of the hypolimnion on walleye (Sander vitreus) movements in a coastal embayment in Lake Ontario. Using historical water quality monitoring data, we documented seasonal and annual fluctuations in availability of both 'suitable' (all temperatures, DO > 3 mg/L) and 'optimum' (temperatures 18-23 °C, DO > 5mg/L) abiotic habitat for walleye and determined how these changes influenced walleye movements over a three-year period.

Results: Hypoxia (< 3 mg/L DO) was present in Hamilton Harbour every summer that data were available (32 of the 42 years between 1976 and 2018), with a maximum of 68.4% of the harbour volume in 1990. We found that thermal stratification and a hypoxic hypolimnion greatly reduced the volume of suitable habitat during our telemetry study. The reduction of suitable habitat significantly reduced walleye movement distances, however as the summer progressed, this remaining suitable habitat warmed into their thermal optimum range which was found to increase walleye movement distances. Despite the seemingly poor conditions, tagged walleye remained in the harbour for most of the year, and were the fastest growing individuals compared to other sampled coastal subpopulations in Lake Ontario.

Conclusions: Although we documented a reduction in the quantity of non-hypoxic habitat available to walleye, the water temperature of the remaining habitat increased throughout the summer into the physiologically optimum range for walleye and increased in metabolic quality. Many abiotic factors influence how, where, and what habitat fish choose to use, and this study reveals the importance of considering both habitat quality (temperature and dissolved oxygen) and quantity when evaluating fish habitat use and behaviour.

背景:在全球范围内,温带湖泊正在经历地表水温度升高、夏季分层期延长以及表层和深水溶解氧(DO)减少的过程。鱼类的分布受到多种因素的影响,但水温和溶解氧是已知的特别限制因素,因此随着气候变化,鱼类可能会感受到来自上方和下方的“挤压”。方法:本研究利用声波遥测技术探讨了热分层和低氧离子脱氧对安大略湖沿岸堤防的白眼(桑德玻璃体)运动的影响。利用历史水质监测数据,我们记录了“合适”(所有温度,DO > 3 mg/L)和“最佳”(温度18-23°C, DO > 5mg/L)的非生物栖息地可用性的季节性和年度波动,并确定了这些变化如何影响三年期间的白眼运动。结论:虽然我们记录了非缺氧栖息地的数量减少,但剩余栖息地的水温在整个夏季增加到对白眼来说生理上最适宜的范围,并且代谢质量增加。许多非生物因素影响鱼类选择栖息地的方式、地点和种类,本研究揭示了在评估鱼类栖息地利用和行为时考虑栖息地质量(温度和溶解氧)和数量的重要性。
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引用次数: 0
Density-dependent distributions of hosts and parasitoids resulting from density-independent dispersal rules: implications for host-parasitoid interactions and population dynamics. 由不依赖于密度的扩散规则导致的寄主和寄生蜂的密度依赖分布:对寄主-寄生蜂相互作用和种群动态的影响。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2024-12-27 DOI: 10.1186/s40462-024-00525-2
Toshinori Okuyama

Background: The distribution of hosts and parasitoids across patches is a key factor determining the dynamics of host-parasitoid populations. To connect behavioral rules with population dynamics, it is essential to comprehend how individual-level dispersal behavior influences the distribution of individuals. Typically, a simple deterministic model has been used to describe this connection. This study explicitly derived the relationship between individual-level dispersal behavior and the distribution of individuals across patches, contrasting it with the conventional deterministic model.

Methods: A stochastic individual-based model was developed from a widely used deterministic host-parasitoid population model. Individual-level dispersal rules were simulated in the stochastic model without assuming the resulting distributions. The models assume that the dispersal of hosts and parasitoids is independent of conspecific density. The deterministic model can be seen as an approximation of the stochastic model, describing the outcomes of stochastic processes as their expected patterns. In addition to describing the relationship between dispersal behavior and distribution across patches, its consequences for population dynamics were also examined.

Results: The stochastic model revealed that the distribution of individuals among patches varies with the number of dispersing conspecifics, whereas the deterministic model assumes independence from conspecific density, indicating that the deterministic model fails to capture the outcomes of stochastic dispersal. The resulting density-dependent distributions of hosts and parasitoids lead to other density-dependent interactions between them, such as density-dependent parasitism risk for hosts and density-dependent searching efficiency for parasitoids, ultimately affecting population dynamics. For instance, while aggregation of parasitoids is stabilizing in the deterministic model, it can be both stabilizing and destabilizing in the stochastic model.

Conclusions: The stochastic model revealed that density-dependent distributions of hosts and parasitoids emerge when individuals disperse in a density-independent manner, significantly impacting existing host-parasitoid theory, which assumes density-independent distributions. To address this, the implications of emerging density dependencies for well-known results, such as the pseudointerference of parasitoids and the CV2 > 1 rule, were discussed. Explicitly considering individual-level dispersal behavior is essential for understanding host-parasitoid interactions and population dynamics.

背景:寄主和寄生蜂在斑块上的分布是决定寄主-寄生蜂种群动态的关键因素。为了将行为规则与种群动态联系起来,有必要了解个体水平的分散行为如何影响个体的分布。通常,一个简单的确定性模型被用来描述这种联系。本研究明确推导了个体水平的分散行为与个体在斑块上的分布之间的关系,并将其与传统的确定性模型进行了对比。方法:在广泛应用的确定性寄主-寄生蜂种群模型的基础上,建立随机个体模型。在随机模型中模拟个体水平的分散规则,而不假设结果的分布。这些模型假设寄主和拟寄生物的传播与同种密度无关。确定性模型可以看作是随机模型的近似,将随机过程的结果描述为它们的预期模式。除了描述分散行为与斑块间分布之间的关系外,还研究了其对种群动态的影响。结果:随机模型显示个体在斑块间的分布随分散的同虫数量而变化,而确定性模型假设与同虫密度无关,表明确定性模型无法捕捉随机分散的结果。由此产生的寄主和寄生蜂的密度依赖分布导致寄主和寄生蜂之间的其他密度依赖相互作用,如寄主的密度依赖寄生风险和寄生蜂的密度依赖搜索效率,最终影响种群动态。例如,在确定性模型中,寄生蜂的聚集是稳定的,而在随机模型中,寄生蜂的聚集可能是稳定的,也可能是不稳定的。结论:随机模型显示,当个体以密度无关的方式分散时,寄主和寄生蜂的密度依赖分布出现,这显著影响了现有的假设密度无关分布的寄主-寄生蜂理论。为了解决这一问题,本文讨论了新出现的密度依赖性对众所周知的结果的影响,如拟寄生物的伪干涉和CV2 > 1规则。明确考虑个体水平的扩散行为对于理解宿主-寄生虫相互作用和种群动态至关重要。
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引用次数: 0
Hidden space use behaviors of a nonbreeding migratory bird: the role of environment and social context. 非繁殖候鸟的隐蔽空间利用行为:环境和社会背景的作用。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2024-12-25 DOI: 10.1186/s40462-024-00523-4
Bryant C Dossman, Amanda D Rodewald, Peter P Marra

Background: Movement behavior strongly mediates species and environment interactions, yet our understanding is constrained by challenges tracking space use at fine spatiotemporal resolutions.

Methods: Using an automated telemetry array, we quantified variation in and drivers of space use for a nonbreeding population of migratory bird, the American redstart Setophaga ruticilla.

Results: We identified two distinct and common behaviors - territoriality and floating,- that were governed primarily by NDVI as a proxy of resource availability. Within seasons, declines in weekly resources increased the prevalence of forays and the area of space utilized. Floaters were less likely to maintain body condition throughout the nonbreeding season, which is expected to negatively influence fitness and survival.

Conclusions: Our study demonstrates that nonbreeding migratory birds exhibit a high degree of plasticity in space use that is driven primarily by resource availability but influenced by the dominance hierarchy within an individual's environment which are expected to have important implications on migratory populations.

背景:运动行为强烈地介导物种和环境的相互作用,但我们的理解受到在精细时空分辨率下跟踪空间使用的挑战的限制。方法:采用自动遥测阵列技术,对非繁殖期候鸟美洲红尾鸲(Setophaga ruticilla)种群的空间利用变化及其驱动因素进行了量化分析。结果:我们确定了两种不同而常见的行为——属地性和浮动性,这两种行为主要由NDVI作为资源可用性的代理来控制。在季节内,每周资源的减少增加了突袭的流行程度和利用的空间面积。在整个非繁殖季节,飞蚊不太可能保持身体状况,这预计会对健康和生存产生负面影响。结论:本研究表明,非繁殖候鸟在空间利用上表现出高度的可塑性,这主要受资源可用性的驱动,但受个体环境中的优势等级的影响,这有望对迁徙种群产生重要影响。
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引用次数: 0
Remote sensing reveals the role of forage quality and quantity for summer habitat use in red deer. 遥感揭示了牧草质量和数量对马鹿夏季生境利用的影响。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2024-12-18 DOI: 10.1186/s40462-024-00521-6
Thomas Rempfler, Christian Rossi, Jan Schweizer, Wibke Peters, Claudio Signer, Flurin Filli, Hannes Jenny, Klaus Hackländer, Sven Buchmann, Pia Anderwald

Background: The habitat use of wild ungulates is determined by forage availability, but also the avoidance of predation and human disturbance. They should apply foraging strategies that provide the most energy at the lowest cost. However, due to data limitations at the scale of movement trajectories, it is not clear to what extent even well-studied species such as red deer (Cervus elaphus) trade-off between forage quality and quantity, especially in heterogeneous alpine habitats characterized by short vegetation periods.

Methods: We used remote sensing data to derive spatially continuous forage quality and quantity information. To predict relative nitrogen (i.e. forage quality) and biomass (i.e. forage quantity), we related field data to predictor variables derived from Sentinel-2 satellite data. In particular, our approach employed random forest regression algorithms, integrating various remote sensing variables such as reflectance values, vegetation indices and optical traits derived from a radiative transfer model. We combined these forage characteristics with variables representing human activity, and applied integrated step selection functions to estimate sex-specific summer habitat selection of red deer in open habitats within and around the Swiss National Park, an alpine Strict Nature Reserve.

Results: The combination of vegetation indices and optical traits greatly improved predictive power in both the biomass (R2 = 0.60, Root mean square error (RMSE) = 88.55 g/m2) and relative nitrogen models (R2 = 0.34, RMSE = 0.28%). Both female and male red deer selected more strongly for biomass (estimate = 0.672 ± 0.059 SE for normalised values for females, and 0.507 ± 0.061 for males) than relative nitrogen (estimate = 0.124 ± 0.062 for females, and 0.161 ± 0.061 for males, respectively). Females showed higher levels of use of the Swiss National Park.

Conclusions: Red deer in summer habitats select forage quantity over quality with little difference between sexes. Females respond more strongly to human activities and thus prefer the Swiss National Park. Our results demonstrate the capability of satellite data to estimate forage quality and quantity separately for movement ecology studies, going beyond the exclusive use of conventional vegetation indices.

背景:野生有蹄类动物的生境利用不仅取决于草料的可得性,而且还取决于避免捕食和人为干扰。它们应该采用以最低成本提供最多能量的觅食策略。然而,由于在运动轨迹尺度上的数据限制,即使是马鹿(Cervus elaphus)等被充分研究的物种,特别是在植被期短的异质高山栖息地,也不清楚饲料质量和数量之间的权衡程度。方法:利用遥感数据获取牧草质量和数量的空间连续信息。为了预测相对氮(即饲料质量)和生物量(即饲料数量),我们将现场数据与来自Sentinel-2卫星数据的预测变量相关联。特别是,我们的方法采用随机森林回归算法,整合了各种遥感变量,如反射率值、植被指数和辐射传输模型得出的光学性状。我们将这些牧草特征与代表人类活动的变量相结合,应用综合阶跃选择函数估算了瑞士国家公园(一个高山严格自然保护区)及其周边开放栖息地马鹿的性别特异性夏季栖息地选择。结果:植被指数与光学性状的结合显著提高了生物量模型(R2 = 0.60,均方根误差(RMSE) = 88.55 g/m2)和相对氮模型(R2 = 0.34, RMSE = 0.28%)的预测能力。雌马鹿和雄马鹿对生物量的选择均高于相对氮(雌马鹿和雄马鹿分别为0.124±0.062和0.161±0.061),雌马鹿和雄马鹿分别为0.672±0.059和0.507±0.061。雌性对瑞士国家公园的利用程度更高。结论:夏季生境马鹿重饲料量轻饲料质量,雌雄差异不大。雌性对人类活动的反应更强烈,因此更喜欢瑞士国家公园。我们的研究结果表明,卫星数据能够在运动生态学研究中单独估计饲料质量和数量,而不仅仅是使用传统的植被指数。
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引用次数: 0
A benchmark for computational analysis of animal behavior, using animal-borne tags. 动物行为的计算分析的基准,使用动物传播的标签。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2024-12-18 DOI: 10.1186/s40462-024-00511-8
Benjamin Hoffman, Maddie Cusimano, Vittorio Baglione, Daniela Canestrari, Damien Chevallier, Dominic L DeSantis, Lorène Jeantet, Monique A Ladds, Takuya Maekawa, Vicente Mata-Silva, Víctor Moreno-González, Anthony M Pagano, Eva Trapote, Outi Vainio, Antti Vehkaoja, Ken Yoda, Katherine Zacarian, Ari Friedlaender

Background: Animal-borne sensors ('bio-loggers') can record a suite of kinematic and environmental data, which are used to elucidate animal ecophysiology and improve conservation efforts. Machine learning techniques are used for interpreting the large amounts of data recorded by bio-loggers, but there exists no common framework for comparing the different machine learning techniques in this domain. This makes it difficult to, for example, identify patterns in what works well for machine learning-based analysis of bio-logger data. It also makes it difficult to evaluate the effectiveness of novel methods developed by the machine learning community.

Methods: To address this, we present the Bio-logger Ethogram Benchmark (BEBE), a collection of datasets with behavioral annotations, as well as a modeling task and evaluation metrics. BEBE is to date the largest, most taxonomically diverse, publicly available benchmark of this type, and includes 1654 h of data collected from 149 individuals across nine taxa. Using BEBE, we compare the performance of deep and classical machine learning methods for identifying animal behaviors based on bio-logger data. As an example usage of BEBE, we test an approach based on self-supervised learning. To apply this approach to animal behavior classification, we adapt a deep neural network pre-trained with 700,000 h of data collected from human wrist-worn accelerometers.

Results: We find that deep neural networks out-perform the classical machine learning methods we tested across all nine datasets in BEBE. We additionally find that the approach based on self-supervised learning out-performs the alternatives we tested, especially in settings when there is a low amount of training data available.

Conclusions: In light of these results, we are able to make concrete suggestions for designing studies that rely on machine learning to infer behavior from bio-logger data. Therefore, we expect that BEBE will be useful for making similar suggestions in the future, as additional hypotheses about machine learning techniques are tested. Datasets, models, and evaluation code are made publicly available at https://github.com/earthspecies/BEBE , to enable community use of BEBE.

背景:动物传感器(“生物记录器”)可以记录一套运动和环境数据,用于阐明动物生态生理学和改善保护工作。机器学习技术被用于解释生物记录仪记录的大量数据,但是在这个领域没有通用的框架来比较不同的机器学习技术。例如,这使得识别基于机器学习的生物记录仪数据分析的模式变得困难。这也使得评估机器学习社区开发的新方法的有效性变得困难。方法:为了解决这个问题,我们提出了生物记录仪eththogram基准(BEBE),这是一个带有行为注释的数据集集合,以及建模任务和评估指标。BEBE是迄今为止最大、分类学上最多样化、可公开获得的这类基准,包括从9个分类群的149个个体收集的1654小时的数据。使用BEBE,我们比较了基于生物记录仪数据识别动物行为的深度和经典机器学习方法的性能。作为BEBE的一个例子,我们测试了一种基于自监督学习的方法。为了将这种方法应用于动物行为分类,我们采用了一个深度神经网络,该网络预先训练了从人类腕带加速度计收集的700,000小时数据。结果:我们发现深度神经网络优于经典机器学习方法,我们在BEBE中测试了所有九个数据集。我们还发现,基于自监督学习的方法优于我们测试的替代方法,特别是在可用训练数据量较低的情况下。结论:根据这些结果,我们能够为设计依靠机器学习从生物记录仪数据推断行为的研究提出具体建议。因此,我们期望BEBE在未来对提出类似的建议有用,因为对机器学习技术的其他假设进行了测试。数据集、模型和评估代码在https://github.com/earthspecies/BEBE上公开提供,以使社区能够使用BEBE。
{"title":"A benchmark for computational analysis of animal behavior, using animal-borne tags.","authors":"Benjamin Hoffman, Maddie Cusimano, Vittorio Baglione, Daniela Canestrari, Damien Chevallier, Dominic L DeSantis, Lorène Jeantet, Monique A Ladds, Takuya Maekawa, Vicente Mata-Silva, Víctor Moreno-González, Anthony M Pagano, Eva Trapote, Outi Vainio, Antti Vehkaoja, Ken Yoda, Katherine Zacarian, Ari Friedlaender","doi":"10.1186/s40462-024-00511-8","DOIUrl":"10.1186/s40462-024-00511-8","url":null,"abstract":"<p><strong>Background: </strong>Animal-borne sensors ('bio-loggers') can record a suite of kinematic and environmental data, which are used to elucidate animal ecophysiology and improve conservation efforts. Machine learning techniques are used for interpreting the large amounts of data recorded by bio-loggers, but there exists no common framework for comparing the different machine learning techniques in this domain. This makes it difficult to, for example, identify patterns in what works well for machine learning-based analysis of bio-logger data. It also makes it difficult to evaluate the effectiveness of novel methods developed by the machine learning community.</p><p><strong>Methods: </strong>To address this, we present the Bio-logger Ethogram Benchmark (BEBE), a collection of datasets with behavioral annotations, as well as a modeling task and evaluation metrics. BEBE is to date the largest, most taxonomically diverse, publicly available benchmark of this type, and includes 1654 h of data collected from 149 individuals across nine taxa. Using BEBE, we compare the performance of deep and classical machine learning methods for identifying animal behaviors based on bio-logger data. As an example usage of BEBE, we test an approach based on self-supervised learning. To apply this approach to animal behavior classification, we adapt a deep neural network pre-trained with 700,000 h of data collected from human wrist-worn accelerometers.</p><p><strong>Results: </strong>We find that deep neural networks out-perform the classical machine learning methods we tested across all nine datasets in BEBE. We additionally find that the approach based on self-supervised learning out-performs the alternatives we tested, especially in settings when there is a low amount of training data available.</p><p><strong>Conclusions: </strong>In light of these results, we are able to make concrete suggestions for designing studies that rely on machine learning to infer behavior from bio-logger data. Therefore, we expect that BEBE will be useful for making similar suggestions in the future, as additional hypotheses about machine learning techniques are tested. Datasets, models, and evaluation code are made publicly available at https://github.com/earthspecies/BEBE , to enable community use of BEBE.</p>","PeriodicalId":54288,"journal":{"name":"Movement Ecology","volume":"12 1","pages":"78"},"PeriodicalIF":3.4,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11654173/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856405","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Migratory movements of bats are shaped by barrier effects, sex-biased timing and the adaptive use of winds. 蝙蝠的迁徙运动受到屏障效应、性别偏好的时间和对风的适应性利用的影响。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2024-12-18 DOI: 10.1186/s40462-024-00520-7
Sander Lagerveld, Pepijn de Vries, Jane Harris, Sue Parsons, Elisabeth Debusschere, Ommo Hüppop, Vera Brust, Heiko Schmaljohann

Background: Migratory bats perform seasonal movements between their summer and winter areas. When crossing ecological barriers, like the open sea, they are exposed to an increased mortality risk due to energetically demanding long-distance flights and unexpected inclement weather events. How such barriers affect bat migratory movements is still poorly known.

Methods: To study bat migration patterns in response to an ecological barrier, we tagged 44 Nathusius' pipistrelles Pipistrellus nathusii with radio-transmitters on the East coast of the United Kingdom (UK) in spring 2021 and 2022. Subsequently, we assessed their movements to continental Europe using the MOTUS Wildlife Tracking System. We investigated route selection, timing of migration, overall migration speed and the influence of wind on airspeed, groundspeed and flight altitude during migratory overseas flights.

Results: Barrier effects cause migratory movements along the coast, and crossings over sea are shortened by deviating from the general migration direction. Males depart from the UK later in the season compared to females. The overall migration speed of females was 61 km/day and 88 km/day after their last detection in the UK. Our estimated airspeeds during oversea flights correspond well with airspeeds measured in a wind tunnel. Bats use wind adaptively to reduce airspeed when flying under tailwind and increase airspeed when flying under crosswind conditions. Departures over sea coincidence with tailwinds, enabling bats to more than double their airspeed, reaching ground speeds of up to 16.8 m/s (60.5 km/h). Our analysis suggests that bats select altitudes with favourable wind conditions and that they seek altitudes of several hundred meters, possibly extending up to 2,500 m. Low-altitude migration occurs when wind conditions are less favourable.

Conclusions: Our study demonstrates that bat migratory movements are highly influenced by barrier effects, sex-biased timing of migration and the adaptive use of winds. The results of our study contribute to a more comprehensive understanding of the decision-making process and adaptations bats employ during their migration. Elucidating bat migration patterns will enable us to develop effective conservation measures, for example in relation to the development and operation of coastal and offshore wind farms.

背景:迁徙蝙蝠在夏季和冬季之间进行季节性运动。在跨越海洋等生态屏障时,由于长途飞行和突发恶劣天气,它们面临着更高的死亡风险。这些障碍如何影响蝙蝠的迁徙运动仍然知之甚少。方法:为了研究蝙蝠对生态屏障的迁移模式,我们于2021年和2022年春季在英国东海岸用无线电发射机对44只Nathusius pipistrelles nathusii进行了标记。随后,我们利用MOTUS野生动物追踪系统评估了它们向欧洲大陆的迁移情况。考察了越洋迁徙的航路选择、迁徙时间、总迁徙速度以及风对空速、地速和飞行高度的影响。结果:屏障效应导致海鸟沿海岸迁徙,偏离一般迁徙方向,缩短了越海时间。与雌性相比,雄性在这个季节晚些时候离开英国。在英国,雌蚊的总迁移速度为61公里/天,最后一次发现后为88公里/天。我们估算的海外飞行速度与风洞中测量的速度吻合得很好。蝙蝠自适应地利用风在顺风条件下飞行时降低空速,在侧风条件下飞行时增加空速。在海上的飞行与顺风重合,使蝙蝠的飞行速度增加了一倍多,达到16.8米/秒(60.5公里/小时)的地面速度。我们的分析表明,蝙蝠会选择风条件有利的高度,它们会寻找几百米的高度,可能会延伸到2500米。低空迁移发生在风力条件较差的时候。结论:我们的研究表明,蝙蝠的迁徙运动受到屏障效应、性别偏见的迁徙时间和适应性利用风的高度影响。我们的研究结果有助于更全面地了解蝙蝠在迁徙过程中采用的决策过程和适应性。阐明蝙蝠的迁徙模式将使我们能够制定有效的保护措施,例如与沿海和海上风力发电场的开发和运营有关的措施。
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引用次数: 0
Navigating motherhood: biological and landscape factors affecting postpartum movement in white-tailed deer. 导航母性:影响白尾鹿产后运动的生物和景观因素。
IF 3.4 1区 生物学 Q2 ECOLOGY Pub Date : 2024-12-18 DOI: 10.1186/s40462-024-00517-2
Angela M Holland, Jacob M Haus, Justin R Dion, Joseph E Rogerson, Jacob L Bowman

Background: Population growth and management in cervid species is dependent on reproductive ecology and factors influencing juvenile survival. Aspects of the female's movement behavior likely affect juvenile survival and movement patterns of pregnant and lactating females differ from non-pregnant or non-lactating females. Explanations for these differing movement patterns include change in nutritional demands for the female, isolation during parturition, and predator avoidance. White-tailed deer (Odocoileus virginianus) are an important managed cervid and a better understanding of their reproductive ecology, including the relationships between resources, movement, and juvenile survival, can better inform management.

Methods: Our objective was to determine if biological factors, such as female age, fawn age, number of fawns, as well as characteristics of prepartum range affected the female's postpartum daily movement or overlap of space used pre- and postpartum in Sussex County, Delaware, USA (2,420 km2). We collected GPS locations 2 weeks pre- and postpartum on 22 individual females from 2016 to 2017. In total, we recorded data from 263 days of postpartum movement for an average of 12 days/individual. We used a hierarchical modeling process to test biological factors and prepartum home range characteristics on two aspects of postpartum movement behavior, mean hourly displacements and daily use of prepartum home range.

Results: Mean hourly displacement decreased with increased female age and increased with number of known fawns alive and the female's home range size prior to parturition. We found that as fawns aged the doe increased use of the prepartum home range.

Conclusions: Our results indicate that younger females are moving more than older females during lactation potentially to access higher quality habitat. This increased movement increases nutritional demand and may play a role in fawn survival. Females are more likely to use more of their prepartum home range as fawns age, a finding congruent with previous research. This differentiation in metric response (movement rate vs. space use) emphasizes the complexities of movement ecology and the importance of considering multiple dependent variables for complex behavior.

背景:子宫颈物种的种群增长和管理取决于生殖生态和影响幼鱼存活的因素。雌性的运动行为可能会影响幼鱼的生存,怀孕和哺乳期雌性的运动模式与非怀孕或非哺乳期雌性不同。对这些不同运动模式的解释包括雌性对营养需求的改变、分娩期间的隔离和捕食者的躲避。白尾鹿(Odocoileus virginianus)是一种重要的被管理的鹿科动物,更好地了解其生殖生态,包括资源、运动和幼崽生存之间的关系,可以更好地为管理提供信息。方法:在美国特拉华州苏塞克斯县(2420平方公里),我们的目标是确定生物学因素,如雌性年龄、小鹿年龄、小鹿数量以及预备范围的特征,是否会影响雌性产后的日常活动或产前和产后使用的空间重叠。我们从2016年到2017年收集了22名女性在产前和产后2周的GPS位置。总的来说,我们记录了263天的产后运动数据,平均每人12天。本研究采用分层建模的方法,在产后运动行为、平均小时位移和每日使用预备范围两个方面测试生物学因素和预备范围特征。结果:平均小时位移随母鼠年龄的增加而减少,随已知存活的小鹿数量和分娩前母鼠的家范围大小而增加。我们发现,随着小鹿年龄的增长,母鹿增加了对预备家庭范围的使用。结论:我们的研究结果表明,在哺乳期间,年轻雌性比年长雌性移动更多,可能是为了获得更高质量的栖息地。这种增加的运动增加了对营养的需求,并可能在小鹿的生存中发挥作用。随着幼崽长大,雌性更有可能使用更多的产前活动范围,这一发现与之前的研究一致。这种度量反应的差异(移动速率与空间使用)强调了运动生态学的复杂性,以及考虑复杂行为的多个因变量的重要性。
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